BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350217
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10100.1 | Symbols: TPPI | Haloacid dehalogenase-like hydrol... 1711 0.0
> AT5G10100.1 | Symbols: TPPI | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:3157980-3160445 FORWARD
LENGTH=1280
Length=1280
Score = 1711 bits (926), Expect = 0.0
Identities = 1062/1124 (94%), Gaps = 23/1124 (2%)
Strand=Plus/Plus
Query 1 ATGTCAGCTACTCAAAACGTTGTCGTATCAGAGACCACAA-GATCAAGTATCAT------ 53
|||||||||| ||||||| |||||||||||||||| |||| | |||||||||||
Sbjct 1 ATGTCAGCTAGTCAAAACATTGTCGTATCAGAGACTACAATG-TCAAGTATCATCCCCAA 59
Query 54 ---C--C--C--CAACAACAACTCTTCTTCTCAGAAGCTCCCTCCTGGTTTAATCTCAAT 104
| | | |||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 60 CAACAACAACAACAACAACAACTCTTCTTCACAGAAACTCCCTCCTTGTTTAATCTCAAT 119
Query 105 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAGAGAATCAA 164
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAAAGAATCAA 179
Query 165 CGCTTGGGTCGATTCAATGCGAGCTTCTTCCCCTACTCATCTCAAATCACTTCCTTCTTC 224
||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 180 CGCTTGGGTAGATTCAATGCGTGCTTCTTCTCCTACTCATCTCAAATCTCTTCCTTCTTC 239
Query 225 TATCTCCTCACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAT 284
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATCTCCACACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAA 299
Query 285 GTTCGAACAGATAATGGAAGCTTCGAGAGGAAAACAAATCGTAATGTTTCTTGATTATGA 344
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ATTCGAACAGATAATGGAAGCTTCGAGAGGGAAACAAATCGTAATGTTTCTTGATTATGA 359
Query 345 CGGTACTCTCTCTCCCATCGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 404
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGTACTCTCTCTCCCATTGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 419
Query 405 AAGAACAGTaaaaaaaCTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 464
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGAACAGTGAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 479
Query 465 AGACAAGGTGTATAATTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 524
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACAAGGTGTATAACTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 539
Query 525 GGACATTAAAGGCCCAGCAAAAGGCTTCTCTAGACACAAGAGGGTTAAACAGTCTCTTCT 584
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GGACATTAAAGGTCCAGCAAAAGGCTTCTCCAGACACAAGAGGGTTAAACAGTCTCTTCT 599
Query 585 GTACCAACCAGCTAATGACTATCTTCCCATGATCAATGAAGTTTATAGACAACTCTTGGA 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 GTACCAACCAGCTAATGACTATCTTCCCATGATCGATGAAGTTTATAGACAACTCTTGGA 659
Query 645 AAAAACCAAATCAACTCCGGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 704
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAAACAAAATCGACTCCAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 719
Query 705 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTTCAGGTTCGGTCGGTATT 764
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTACAGGTTCGGTCGGTATT 779
Query 765 AAAAGAA-TTCCCTACGCTGAAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 823
||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAA-GAAATTCCCTACGCTGCAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 838
Query 824 TGATTGAATGGGATAAAGGAAAAGCTCTTGAGTTCTTGTTAGAGGCACTTGGATTTGGGA 883
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 839 TGATTGAATGGGATAAAGGAAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGA 898
Query 884 GCACTAACAATGTTTTTCCGGTTTACATCGGTGATGATCGGACTGACGAAGATGCATTTA 943
||||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 899 ACACTAACAATGTTTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTA 958
Query 944 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1018
Query 1004 CCGATGCTTCGTATTCTTTGCAAGATCCATCCGAGGCAAGTGATGGATTTCTTGCGAAGA 1063
| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 1019 CTGATGCTTCGTATTCTTTGCAAGATCCATCCGAGG----TGATGGATTTCTTACGACGA 1074
Query 1064 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAAGGATAA 1107
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1075 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAATGATAA 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5