BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350224
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10150.1 | Symbols: | Domain of unknown function (DUF966) |... 1812 0.0
> AT5G10150.1 | Symbols: | Domain of unknown function (DUF966)
| chr5:3181983-3183865 REVERSE LENGTH=1469
Length=1469
Score = 1812 bits (981), Expect = 0.0
Identities = 1167/1254 (93%), Gaps = 24/1254 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTGTAAGATGCAGAAGAGGCAGAGAGAGCAACAAAAGTCCAGAGAGGCTAATA 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 32 ATGGAAGCTGTAAGATGCAGAAGAGGCAGAGAGAACAACAAAAGTCCAGAGAGGATCATA 91
Query 61 AGGTCTTTGAATCATCATCATCAACATGAAGAAGAACTTGAAGATGAGGTCAAGACTAAG 120
||||||||| | |||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 92 AGGTCTTTG-A--ATCATCATCAACATGATGAAGAACTTGAAGAAGAGGTCAAGACAAAG 148
Query 121 AAACCCATTTTCAGAAGAGTCCAAGTTGTTTATTATCTCACTAGAAATGGCCACCTTGAA 180
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 149 AAACCCATTTTCCGAAGAGTCCAAGTTGTTTACTATCTCACAAGAAATGGCCACCTTGAA 208
Query 181 CACCCTCACTTCATCGAAGTCATTTCTCCGGTTAACCAGCCTCTCCGGTTAAGAGATGTG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CATCCTCACTTCATCGAAGTCATTTCTCCGGTTAACCAGCCTCTCCGGTTAAGAGATGTG 268
Query 241 ATGAACCGGCTTACGGTACTGAGAGGGAAGTGCATGCCATCACAATATGCTTGGTCGTGT 300
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 269 ATGAACCGGCTTACGATTCTGAGAGGGAAGTGCATGACATCACAATATGCTTGGTCGTGT 328
Query 301 AAAAGGAGCTATAGAAATGGATTCGTTTGGAATGACTTAGCAGAGAACGATGTGATTTAC 360
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 329 AAAAGGAGCTATAGAAATGGATTTGTGTGGAATGACTTAGCAGAGAATGATGTGATTTAC 388
Query 361 CCTTCGGACTGTGCTGAGTATGTCTTGAAAGGATCTGAAATCACCGACAAATTTCAAGAA 420
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CCTTCTGACTGTGCTGAATATGTCTTGAAAGGATCTGAAATCACCGACAAATTTCAAGAA 448
Query 421 GTACATGTGAACAGACCATTGTCTGGTTCTATTGAAGAAGCTCCAAAAAGTCGACTTCTC 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 449 GTACATGTGAACAGACCATTGTCTGGTTCTATTCAAGAAGCTCCAAAAAGTCGACTTCTC 508
Query 481 AGGTCAAAACTCAAACCTCAAAACAGAACGACGTCGTTTGATGACTCAGAGCTCTACGTC 540
|||||||||||||| ||||||||| ||||| |||||||||| ||| ||||||||||||||
Sbjct 509 AGGTCAAAACTCAAGCCTCAAAACCGAACGGCGTCGTTTGACGACGCAGAGCTCTACGTC 568
Query 541 ---------------GAAGAAGACGGAGAGTACGAACTTTACGAAGAGAAAACGAGTTAT 585
|||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 569 GGAGAAGAGGAAGAGGAAGAAGATGGAGAGTACGAGCTTTACGAAGAGAAAACGAGTTAC 628
Query 586 ACATCTTCCACGACGCCGCAATCTCGCTGTTCTCGAGGCTTATCGACGGAGACAATCGAA 645
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 629 ACATCTTCCACGACGCCTCAATCTCGCTGTTCTCGAGGCGTATCGACGGAGACAATGGAA 688
Query 646 TCCACCGAACAAAAACCGATCTTGGTCAAGAAAGAACAAGATTTGCAAGTACGATCTGAC 705
||||||||||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||
Sbjct 689 TCCACCGAACAAAAACCGAACTTGACCAAGACAGAGCAAGATTTGCAAGTACGTTCTGAC 748
Query 706 TCGTCCGAGTTGACTCGTTCCAACCAGGTTGTGAAGCCACGTCGACTCGACGTTTCGACG 765
|||||||| |||||||||||||||| ||| |||||||||||||||| ||| |||||||||
Sbjct 749 TCGTCCGATTTGACTCGTTCCAACCCGGTGGTGAAGCCACGTCGACACGAAGTTTCGACG 808
Query 766 CGGGTCGAGGACGGAGATCCGGTGGATCCCGGATCGGGACGTGGGTCGATGTGGCTCCAG 825
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 809 CGGGTCGAGGACGGAGATCCGGTGGAACCCGGATCGGGTCGTGGGTCGATGTGGCTGCAG 868
Query 826 ATGATCTCGTGCGGGCACATCGCCGCCACCAAGTACTACGCACCGAGCGTGATGAATCCG 885
|||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 869 ATGATCTCTTGCGGTCACAT---CGCCACCAAGTACTACGCACCGAGTGTGATGAATCCG 925
Query 886 AGACAAAAAGAAGAGAATCTTCGAAAAGGAGTTTTATGCAAGAACATTGTGAAGAAGACC 945
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 926 AGACAAAAAGAAGAGAACCTTCGAAAAGGAGTTTTGTGCAAGAACATTGTCAAGAAGACT 985
Query 946 GTTGTAGATGACGAACGTGAGATGATAAGGTTCATGTCGGAGAATCCAAGGTTCGGGAAT 1005
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GTCGTAGATGACGAGCGTGAGATGATAAGGTTCATGTCGGAGAATCCAAGGTTCGGGAAT 1045
Query 1006 CCACAGGCGGAGGAGAAAGAGTATTTCAGCGGAAGCATCGTCGAGTCGGTGAGTCAGGAA 1065
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1046 CCTCAGGCGGAGGAGAAAGAGTATTTCAGCGGAAGCATCGTTGAGTCGGTGAGTCAGGAA 1105
Query 1066 CGAGTCACGGCTGAACCATCGCTAAGACGATCCAACTCGTTCAACGAGGAAAGATCAAAG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 CGAGTCACGGCTGAACCATCGCTAAGACGATCCAACTCGTTCAACGAGGAAAGATCAAAG 1165
Query 1126 ATTATGGAGATGGCTAAGGAGACGATCAAGAAGGAAGAAGAAAGATCGATCGTGAAGGTG 1185
||| | |||||||||||||| |||| | |||| |||||||||||||||| | |||||||
Sbjct 1166 ATTGTTGAGATGGCTAAGGAAACGA--A-GAAGAAAGAAGAAAGATCGATGGCGAAGGTG 1222
Query 1186 AAATGTATACCGAGAACGTGTTTAATGTCATCATCGAAGCAAATCAAGAAATAA 1239
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AAATGCATACCAAGAACGTGTTTAATGTCATCATCGAAGCAAATCAAGAAATAA 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5