BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350245
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10380.1 | Symbols: RING1, ATRING1 | RING/U-box superfamily ... 1085 0.0
> AT5G10380.1 | Symbols: RING1, ATRING1 | RING/U-box superfamily
protein | chr5:3267635-3268813 FORWARD LENGTH=1179
Length=1179
Score = 1085 bits (587), Expect = 0.0
Identities = 753/834 (90%), Gaps = 8/834 (1%)
Strand=Plus/Plus
Query 90 CCCTCCGCCACCACCACCACCGCCACAGAGCAAGCTCTCTCTCCTACTCCCCACCTATAT 149
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 263 CCC-CCGCCACCACCACCACCGCCACCGAGGGAGCTCTCTCTCCTACTCCCCACCTCGAT 321
Query 150 CTGCGTCGTCGGCTCAGTCATACTCTTTCTCTTTCTAGTCGTCTTCCTCTACCTCTACAT 209
|||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 322 CTGCGTCGTCGGCTCAATCATACTCTTTCTATTTCTAGTCTTCTTCCTCTACCTCCACAT 381
Query 210 AACGCAACCACGGCGGAACTCAGCCGCTACCGTAACTCCCGGTGACACAAGCCAACGGGA 269
||||||| |||||||| |||||||| | |||||||||||||||||||| ||||| |||
Sbjct 382 CACGCAACAACGGCGGATTTCAGCCGCCAGCGTAACTCCCGGTGACACAAACCAACAGGA 441
Query 270 AAACGAAGACGAAACAGAGGAGAGAGATCACTCCGACTTCCATCACGTCTGGCGAATCCC 329
| | || ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||
Sbjct 442 AGATGAGGACGAAACAGAGGAGAGAGATTTCTCCGACTTTCATCACGTTTGGCAAATCCC 501
Query 330 AACCGTCGGTCTCCATCGTTCCGCCATCAACTCGATCACAGTTGTTGGATTCAAAAAGGG 389
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 502 AACCGTCGGTCTCCACCGTTCCGCGATCAACTCGATCACAGTCGTTGGATTCAAAAAGGG 561
Query 390 AGAAGGGATCATCGACGGCACAGAATGCTCTGTCTGCTTAAACGAGTTTGAAGAAGACGA 449
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGAAGGGATAATCGACGGCACAGAATGCTCTGTCTGCTTAAACGAGTTTGAAGAAGACGA 621
Query 450 ATCACTGAGATTGTTACCAAAGTGTAGTCACGCCTTTCA-CATTAACTGCATTGACACTT 508
|| |||||| |||||||||||||||| || |||||||| | | || ||||| |||||||
Sbjct 622 GTCGCTGAGACTGTTACCAAAGTGTAGCCATGCCTTTCATC-TAAATTGCATCGACACTT 680
Query 509 GGTTGCTCTCTCACAAGAACTGTCCTTTATGTCGTGCCCCTGTTCTTCTTCTCACTGAGC 568
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 681 GGTTGCTCTCTCACAAGAACTGTCCTTTATGTCGTGCCCCTGTACTTCTTATCACTGAAC 740
Query 569 CTCCTCATCAAGAAACAGAGACGAATCATCAACCAGATTCTGAATCGAGCAATGACCTCA 628
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CACCTCATCAAGAAACAGAGACGAATCATCAACCAGATTCTGAATCGAGCAATGACCTCC 800
Query 629 GTGGAGGAGGACAAGAGAGTTCTAGATCCAGAAGAAACCATAATATTATTCTTCCAAGGG 688
||||| || |||||| ||||| ||||| |||||||||||||| ||| ||||||||||||
Sbjct 801 GTGGA--AG-ACAAGACAGTTCCAGATCTAGAAGAAACCATAACATTTTTCTTCCAAGGG 857
Query 689 CACAAAGCGATTTGGCAAACCATTGTGGCTCGGGAAGAGTGGAAAATGTGAGAAGATCGT 748
||||||| |||||||||||| | |||||||| |||||||| ||||| |||||||||||||
Sbjct 858 CACAAAGTGATTTGGCAAACTACTGTGGCTCAGGAAGAGTAGAAAACGTGAGAAGATCGT 917
Query 749 CATCAATTGGAGGAAGCTTATCACTTTGCGATGGTAATTA-CAATGCTACTAGAAGTGGA 807
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 918 TTTCAATTGGAGGAAGCTTATCACTTTGCGATGGTA-TTAACAATGCTACTAGAAGTGGA 976
Query 808 AGACAGTTCTATACCAGTTTCAGTGCTAACTTCTTCTCATCATCAAGAAGATTAAGGAGC 867
||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
Sbjct 977 AGACAGTTCTATACCAGCTTCAGTGCTAACTTGTTCTCATCATCAAGAAGAGTAAGGAAC 1036
Query 868 CAAGATCCGATTCTACCAAACCGTACACCATCTGTATCTGGTAATTTCAGTTAA 921
|| | ||||||| || ||||| | ||||| ||| ||||||| |||||||
Sbjct 1037 GAACAACCGATTCCACAAAACCAAATGCCATCCGTAACTGGTAACACCAGTTAA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5