BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350326
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like c... 2156 0.0
> AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like
cyclin 3B from Arabidopsis | chr5:3601517-3605265 REVERSE LENGTH=1743
Length=1743
Score = 2156 bits (1167), Expect = 0.0
Identities = 1263/1311 (96%), Gaps = 0/1311 (0%)
Strand=Plus/Plus
Query 1 ATGTATTGCTCTTCTTCAATGCATCCAAATGCAAACAAAGAAAATACCTCTACTTCAGAT 60
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 139 ATGTATTGCTCTTCTTCGATGCATCCAAATGCAAACAAAGAAAATATCTCTACTTCAGAT 198
Query 61 GTTCAGGAGAATGTTGTACGAATAACTAGATCACGAGCTAAAAAAGCCATGGGAGGAGGA 120
|| ||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 199 GTACAGGAGAGTTTTGTACGAATAACGAGATCACGAGCTAAAAAAGCCATGGGAAGAGGA 258
Query 121 GTATCAATACCTCCAACAAAACCCACTTTTAAACAGCAAAAGAGACGTGCCGTACTTAAG 180
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 259 GTATCAATACCTCCAACAAAACCTTCTTTTAAACAGCAAAAGAGACGTGCAGTACTTAAG 318
Query 181 GATGTGAGTAATACTTCTGCAGATAATGTTTATTCAGAACTCCTAAAGGGAGGCAACATC 240
|||||||||||||| |||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 319 GATGTGAGTAATACCTCTGCAGATATTATTTATTCAGAACTTCGAAAGGGAGGCAACATC 378
Query 241 AAGGCTAACAGAAAATGTTTAAAAGAGCCTAAAAAAGCAGCAAAGGAAGGTGCTAATATT 300
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 379 AAGGCAAACAGAAAATGTCTAAAAGAGCCTAAAAAAGCAGCAAAGGAAGGTGCTAACAGT 438
Query 301 GCCATGGAAATTCTGGTAGATATGCATACAGAAAAGTCAAAATTAGCAGAAGATTTGTCC 360
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 439 GCCATGGATATTCTGGTAGATATGCATACAGAAAAATCAAAATTAGCAGAAGATTTGTCC 498
Query 361 AAGATCAGGATGGCTGAAGCCCAAGATGTCTGTCTTTCAAACTCCAACGATGAAGAAATT 420
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 499 AAGATCAGGATGGCTGAAGCCCAAGATGTCTCTCTTTCAAACTTTAAAGATGAAGAAATT 558
Query 421 ACTGAGCAACAAGAAGATGGATCGGGTGTCATGGAGTTTCTTCAAGTTGTAGATATTGAT 480
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 559 ACTGAGCAACAAGAAGATGGATCAGGTGTCATGGAGTTACTTCAAGTTGTAGATATTGAT 618
Query 481 TCCAACGTTGAAGATCCACAGTGTTGCAGCTTGTATGCTGCTGATATATACAATAACATA 540
|||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 619 TCCAACGTCGAAGATCCACAGTGTTGCAGCTTGTATGCTGCTGATATATATGACAACATA 678
Query 541 CATGTTGCAGAGCTTCAACAACGACCCTTGGCTAATTATATGGAGCTTGTGCAGCGAGAC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CATGTTGCAGAGCTTCAACAACGACCCTTGGCTAATTATATGGAGCTTGTGCAGCGAGAT 738
Query 601 ATCGACCCAGAAATGAGAAAGATTCTGATTGACTGGCTTGTAGAGGTTTCTGACGACTAC 660
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 739 ATCGACCCAGACATGAGAAAGATTCTGATTGACTGGCTTGTAGAAGTTTCTGACGACTAC 798
Query 661 AAGCTGGTTCCAGATACGCTTTACCTTACAGTTAATCTTATCGACCGGTTTCTGTCCAAC 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 799 AAGCTGGTTCCAGATACGCTTTACCTTACAGTGAATCTTATCGACCGGTTTCTGTCCAAC 858
Query 721 AGTTACATTGAAAGGCAAAGACTCCAGCTCCTTGGTGTCTCTTGCATGCTTATAGCTTCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGTTACATTGAAAGGCAAAGACTCCAGCTCCTTGGTGTCTCTTGCATGCTTATAGCTTCA 918
Query 781 AAATATGAAGAGCTTTGCGCACCAGGGGTGGAGGAGTTTTGCTTCATTACGGCCAACACA 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AAATATGAAGAGCTTTCCGCACCAGGGGTGGAGGAGTTTTGCTTCATTACGGCCAACACA 978
Query 841 TACACAAGACCAGAAGTGCTGAGCATGGAGATTCAAATTCTAAATTTTGTGCACTTTAAA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 979 TACACAAGACCAGAAGTGCTGAGCATGGAGATTCAAATTCTAAATTTTGTGCACTTTAGA 1038
Query 901 TTATCGGTTCCTACCACCAAAACATTTCTGAGGCGGTTCATTAAAGCAGCTCAAGCTTCG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTATCGGTTCCTACCACCAAAACATTTCTGAGGCGGTTCATTAAAGCAGCTCAAGCTTCG 1098
Query 961 TACAAGGTGCCTTTCATTGAGCTGGAGTTTTTAGCAAACTATCTCGCTGAATTGACACTG 1020
|||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 1099 TACAAGGTGCCTTTCATTGAACTGGAGTATTTAGCAAACTATCTCGCCGAATTGACACTG 1158
Query 1021 GTGGAATATACTTTCCTAAGGTTCCTGCCATCACTAATTGCTGCTTCAGCTGTTTTCTTA 1080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1159 GTGGAATATAGTTTCCTAAGGTTCCTGCCATCACTAATTGCTGCTTCAGCTGTTTTCCTA 1218
Query 1081 GCCAGATGGACACTCGACCAAACTGACCATCCTTGGAACCCTACTCTGCAACACTACACC 1140
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GCCCGATGGACACTCGACCAAACTGACCATCCTTGGAACCCTACTCTGCAACACTACACC 1278
Query 1141 AGATATGAGGTAGCTGAGCTGAAGAGCACAGTTCTCGCAATGGAGGACTTGCAGCTCAAC 1200
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1279 AGATATGAGGTAGCTGAGCTGAAGAACACAGTTCTCGCCATGGAGGACTTGCAGCTCAAC 1338
Query 1201 ACCAGTGGCTGTACCCTCGCTGCCACCCGTGAGAAATACAACCAACCAAAGTTTAAGAGC 1260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ACCAGTGGCTGTACTCTCGCTGCCACCCGTGAGAAATACAACCAACCAAAGTTTAAGAGC 1398
Query 1261 GTGGCAAAGCTGACATCTCCCAAACGAGTTACATCACTTTTCTCAAGATGA 1311
||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1399 GTGGCAAAGCTGACATCTCCCAAACGAGTCACATCACTATTCTCAAGATGA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5