BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350338
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11430.1 | Symbols: | SPOC domain / Transcription elongatio... 3007 0.0
AT5G25520.2 | Symbols: | SPOC domain / Transcription elongatio... 695 0.0
AT3G29639.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 313 6e-84
> AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:3648054-3652404 FORWARD LENGTH=2882
Length=2882
Score = 3007 bits (1628), Expect = 0.0
Identities = 1824/1916 (95%), Gaps = 24/1916 (1%)
Strand=Plus/Plus
Query 548 ATCTTGGCGAGACGAAGGATTATGGAACCGGTGGTGAAAAGTCATATCAGGATCCAAAAC 607
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ATCTTGGCGAAACGAAGGATTATGGAACCGGTGGTGAAAAGTCATTTCAGGATCCAAAAC 899
Query 608 TTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCTATTTGGAGGTGTGAACAAAAAGT 667
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 TTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCTATTTGGTGGTGTGAACAAAAAGT 959
Query 668 ACAGAGAGAGGGGAAGGTCCCTCTTATTCAATTTGAAGGATAAGAACAATCCTGATCTAA 727
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 960 ACAGAGAGAGGGGAAGGTCCCTCTTATTCAACTTGAAGGATAAGAACAATCCTGAGCTAA 1019
Query 728 GAGAAAGAGTTATGTCGGAAGAAATTTCTGCTGAGAGGTTGTGTTCTATGACAGCCGAAG 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGAAAGAGTTATGTCGGAAGAAATTTCTGCTGAGAGGTTGTGTTCTATGACAGCCGAAG 1079
Query 788 AATTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAAGCCAAAGCTGAAGAGATGGCAAAGA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AATTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAAGCCAAAGCTGAAGAGATGGCAAAGA 1139
Query 848 TGGTTGTCCTGCAGGATACAGATATTGATGTCAGAAGTCTGGTGAGGAAAACACATAAGG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 TGGTTGTCCTGCAGGATACAGATATTGATGTCAGAAGTCTGGTGAGGAAAACACACAAGG 1199
Query 908 GTGAATTCCAGGTTGAGATTGAACCAGTTGACAGGGGCACGGTAGATGTCTCTGGTGGCA 967
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 GTGAATTCCAGGTTGAAATTGAACCAGTTGACAGGGGCACAGTAGATGTCTCTGGTGGCA 1259
Query 968 TCATGTCACGTAGCAAACGCCGACCCAAAGCCAAATCTCATTCTGTCAAAACCACTCTCA 1027
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1260 TCATGTCACGTAGCAAACGTCGACCCAGAGCCAAATCTCATTCTGTCAAAACCGCTCTCA 1319
Query 1028 AAGATGAGGCAGCAAAAGCTGATAGTGAAAAATCACGCTCAACTCCTCCCTCAACTGAAG 1087
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1320 AAGATGAGGCAGCAAAAGCTGACAATGAGAAATCACGCTCAACTCCTCCCTCAACTGAAG 1379
Query 1088 AGATCGATCCCATGCAAGGTTTGGGGATCGATGATGAATTGAAGGACGTGGGGTTTCTTC 1147
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 AGATAGATCCCATGCAAGGTTTGGGGATCGATGATGAATTGAAGGACGTGGAGTTTCTTC 1439
Query 1148 CTCCAATTGTATCACTTGATGAATTCATGGAATCTCTAGACTCTGAGCCTCCATTTGAAA 1207
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 CTCCAATTGTATCACTTGATGAATTCATGGAATCCCTAGACTCTGAGCCTCCATTTGAAA 1499
Query 1208 GTCCGCATGGTAATTCTGAAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCTGAAGCTG 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1500 GTCCGCATGGTAATTCTGAAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCCGAAGCTG 1559
Query 1268 GGTCAGACTCAAAATCTCCTAAAGGATCTCCTAAGGAACCAAGTGATAAAAGTTTGCCTG 1327
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 GGTCAGACTCAAAATCTCCTAAAGGATCTCCTAAGGAACTAAGTGATAAAAGTTTGCCTG 1619
Query 1328 AACCAAAACCAGAAAAGATTGATGAAGTGTCCCC-GAAGGTTGATGCCAACGTCAAAGTT 1386
|| ||||||||||||||||||||||||| |||| || | |||||||||| |||||||||
Sbjct 1620 AAGCAAAACCAGAAAAGATTGATGAAGTAACCCCTGA-GTTTGATGCCAATGTCAAAGTT 1678
Query 1387 GATGACGATGTCGCTAGACTTGAGAAAACATCTGCACTTAGTGATGATAAGGGAGAAAGA 1446
||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1679 GATGACGATATCTCTAGAGTTGAGAAAGCAGCTGCACTTAGTGATGATAAGGGAGAAAGA 1738
Query 1447 GCATGGGATGGAATACTGCAACTGAGTATGTCTTCCGTAGTCCCTGTCACTGGCATTTTC 1506
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1739 GCATGGGATGGAATACTGCAACTGAGTATGTCTTCCGTAGTCCCTGTCGCTGGCATTTTC 1798
Query 1507 AAAAGTGGTGAGAAAGCAGAGACGAGCGAGTGGCCGGCGATGGTGGAAGTTAAGGGTAGA 1566
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1799 AAAAGTGGTGAGAAAGCAGAAACTAGCGAGTGGCCGGCGATGGTGGAAGTTAAGGGTAGA 1858
Query 1567 GTTAGGCTAAGTGGGTTTGGGAAGTTTATTCAAGAGCTTCCTAAGTCTCGAACCCGTGCC 1626
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1859 GTTAGGCTGAGTGGGTTTGGGAAATTTATTCAAGAGCTTCCCAAGTCTCGAACCCGTGCC 1918
Query 1627 CTAATGGTAATGTACTTGGCTTGTAAAGACGGCATTTCTGAGAGCCAGCGTGGAAGCCTT 1686
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1919 CTAATGGTAATGTACTTGGCTTATAAAGACGGCATTTCTGAGAGCCAGCGTGGAAGCCTT 1978
Query 1687 ATTGAGGTTATTGATTCCTACGTTGCTGATCAGAGAGTTGGCTACGCAGAGCCAGCCTCA 1746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1979 ATTGAGGTTATTGATTCCTACGTTGCTGATCAGAGAGTTGGCTACGCAGAGCCAGCTTCA 2038
Query 1747 GGAGTGGAGCTTTACCTTTGCCCAACACGTGGCGAGACTCTGGATTTGCTAAGCAAAGTC 1806
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 2039 GGAGTGGAGCTTTACCTTTGCCCAACACGTGGGGAGACTCTAGATTTGCTAAACAAAGTC 2098
Query 1807 ATCTCTCAAGAACAGCTCGATGAGGTCAAGTCTTTGGATATTGGATTGGTTGGAGTTGTT 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 ATCTCTCAAGAACAGCTCGATGAGGTCAAGTCTTTGGATATTGGATTGGTTGGAGTTGTT 2158
Query 1867 GTGTGGAGACGAGCCGTCGTTCCCAAGCCCGGTTCCGGTTCAAGACGTCAGCATTCTTCT 1926
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2159 GTGTGGAGACGAGCCGTCGTTCCCAAGCCCGGTTCCGGTTCAAAACGTCAGCATTCTTTT 2218
Query 1927 TCTTCTTTTCTTGGTTCTAAAACCTCTGTTTTGCCTGTAAACAAGAAGCAGAGAATGCAT 1986
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2219 TCTTCTTCTATTGGTTCTAAAACCTCTGTTTTGCCTGTAAACAAGAAGCAGAGAGTGCAT 2278
Query 1987 GTCTCC-GAGAAACCTCTTGTTGTTGCATCTATAAGGAATCGTAATCATGGTTATGGAGG 2045
|| | | ||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct 2279 GT-TACAGAGAAACCTCTTGTTGTTGCATCAATGAGAAATCACCATCATGGTTATG---- 2333
Query 2046 TGAAGGTGTGAAACATGATGCTGCTGGtgatgatgatgatgatgTGCCGCCTGGATTTGG 2105
|||| | |||||| |||||| ||||||||||| || ||||||||||||||
Sbjct 2334 TGAA------A--CATGATACTGCTGCTGATGATGATG-TG-----CCGCCTGGATTTGG 2379
Query 2106 TCCTGTAGCTTCGAGAGATGATGATGATTTACCGGAATTTAACTTCAGTTCCTCCGTTGT 2165
|||||| ||||| ||||| || ||||||||||||||||||||||| | |||||| |||||
Sbjct 2380 TCCTGTGGCTTCAAGAGACGAAGATGATTTACCGGAATTTAACTTTAATTCCTCGGTTGT 2439
Query 2166 GCCAGTTTCTTCTCCCCAGCCATTACCAGCTCAATCTAAGTCTTTGGATCAAGTAAGAAA 2225
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 GCCAGTTTCTTCTCCTCAGCCATTACCAGCTCAATCTAAGTCTTTGGATCAAGTAAGAAA 2499
Query 2226 GCTCATACACAAGTATGGAAAATCTGCAAGCATCT-ATGATGATGATGACGATGAAGACG 2284
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2500 GCTCATACACAAGTATGGAAAATCTGCAAGCA-CTTATGATGATGATGACGATGAGGACG 2558
Query 2285 ACATACCTGAATGGCAGCCACACGTCCCTAGCCACCAGCTTCCACCACCGCCGCCTCCAC 2344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 ACATACCTGAATGGCAGCCACACGTCCCTAGCCACCAGCTTCCACCACCGCCGCCTCCAC 2618
Query 2345 CTCCCGGCTTCAGACCCGAGGTGTTTAGACCGCCTCAAGATGGTTGGTGGGATAATCAAA 2404
||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2619 CTCTCGGCTTCAGACCCGAGGTATTTAGACCGCCTCAAGATGGTTGGTATGATAATCAAA 2678
Query 2405 ATGGAGGATCAGGGCAACACTATGAGCGGAACCAGTCAAGAAACAGAGGATTTTAA 2460
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2679 ACGGAGGATCAGGGCAACACTATGAGCGGAACCAGTCAAGAAACAGAGGATTTTAA 2734
Score = 734 bits (397), Expect = 0.0
Identities = 504/555 (91%), Gaps = 10/555 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAGATAAATGGGTCCATGCAGCTAGCAGGAAAGCGCAAGTCACTGCCGGAGACC 60
||||| ||||||||||||||||||||||||| |||||||| ||||||||| || |||||
Sbjct 119 ATGGCCGAGATAAATGGGTCCATGCAGCTAGTAGGAAAGCACAAGTCACTACCTCAGACC 178
Query 61 ACTCTC---GGTGGTTCTGCATCTGAGGCACCAAACAAGCA-CTATAGACCATGGTTACA 116
|||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 179 ACTCTCGGTGGTGGTTCTGCATCCGAGGCACCAAACAAGCAGGT-TAGACCATGGTTACA 237
Query 117 GCAATTGTCTCCAGCAAGCAATGGGATTCTGCATATTCCTACTAATATGCTTTCTCAAAA 176
||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 238 GCAGTTGTCTCCAGCAAGCAATGGGATTCTGCATATTCCTACTAAAATACTTTCTCAAGA 297
Query 177 GACACTACATTCACTGATGCATGGCAAGAGAGTC-ACGCAAACAGAATCCCCTCTCCAGA 235
|||||||||||| |||||||||||||||| || | ||||||||||||||| ||| |||||
Sbjct 298 GACACTACATTCTCTGATGCATGGCAAGAAAG-CGACGCAAACAGAATCCGCTCCCCAGA 356
Query 236 AATCTGTAAAGCCTGTTGTAAGCAAGAAACAGCAAAT--C-CCACCGCAAAGGTCAGTGA 292
|| | | |||||| ||||||| |||||| ||||| | | || || |||||||||||||
Sbjct 357 AACCGGCAAAGCCGGTTGTAAACAAGAAGCAGCATGTCCCTCCTCCACAAAGGTCAGTGA 416
Query 293 AAGCCATGGATGAAGTAAATGAGTCTGTGAGGTCTAAAATGAGGGAGTCATTAGCATCTG 352
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 417 AAGCGATGGAGGAAGTAAATGAGTCGGTGAGGTCTAAAATGAGGGAGTCATTAGCATCCG 476
Query 353 CGTTGGCCTTGGTTCAGAAAGATGACGAATCTCCTAAGGGGAAAGAGAATATAGGGACTG 412
|||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 477 CGTTGGCCTTGGTTAAGAAAGATGACGATTCTCCCAAAGGGAAAGAGAATATAGGGACTG 536
Query 413 TGGAAACTCCTGTGATTACTCAGGAGAATACTCAAAGTTTTCAGCCTGTCTCACCTGCTA 472
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 TAGAAACTCCTGTGATTACTCAGGAGAATACTCAAAGTTTTCAGCCTGCCTCACCTGCTA 596
Query 473 GCATCACTGTCCCTATAGGTGAAGGGATCATGTCAGAAATGCCCACCGGTGTTGAAAGTT 532
|||||| ||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||
Sbjct 597 GCATCAGTGTCCCTGTAGGCGAAGGGACCATGTCAGAAATGCCCACCAGTGTTGAAAGTT 656
Query 533 CTGTGCAGAAGGACA 547
|||||||||||||||
Sbjct 657 CTGTGCAGAAGGACA 671
> AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885088-8889620 FORWARD LENGTH=3334
Length=3334
Score = 695 bits (376), Expect = 0.0
Identities = 1052/1364 (77%), Gaps = 104/1364 (8%)
Strand=Plus/Plus
Query 584 AAAAGTCATATCAGGATCCAAAACTTTTGGCATCTAAAATTGAAATGGAACTGTATAAGC 643
||||||| | | |||||||| | || ||||||||||||||||| ||||||| | |||||
Sbjct 1265 AAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGC 1324
Query 644 TATTTGGAGGTGTGAACAAAAAGTACAGAGAGAGGGGAAGGTCCCTCTTATTCAATTTGA 703
||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 1325 TATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGA 1384
Query 704 AGGATAAGAACAATCCTGATCTAAGAGAAAGAGTTATGTC-GGAAGAAATTTCTGCTGAG 762
||||||||||||||||||| ||||||||||| || ||||| |||| | || ||| | |||
Sbjct 1385 AGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAA-AGATATCTCCAGAG 1443
Query 763 AGGTTGTGTTCTATGACAGCCGAAGAA-TTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCA 821
|| || ||| ||||||||| || ||| ||| ||||||||||||||||||||||||| ||
Sbjct 1444 AGATTATGTAATATGACAGCTGAGGAACTTG-CTTCTAAGGAGCTTTCTCAGTGGCGACA 1502
Query 822 AGCCAAAGCTGAAGAGATGGCAAAGATGGTTGTCCTGCAGGATACAGATATTGATGTCAG 881
||| ||||| ||||||||||| ||||||||||||| | ||| ||||| |||||||||||
Sbjct 1503 AGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGACATTGATGTCAG 1562
Query 882 AAGTCTGGTGAGGAAAACACATAAGGGTGAATTCCAGGTTGAGATTGAACCAGTTGACAG 941
|| ||||||||||||||| ||||| ||||| |||||||| || ||||| || ||||||||
Sbjct 1563 AAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCCGTTGACAG 1622
Query 942 -GGGCACGGTAGATGTCTCTGGTG-GCATCATGTCACGTAGCAAACGC-CGACCCAAAGC 998
||| || || |||||||||| || | || | ||| ||| |||| | ||| |||||||
Sbjct 1623 TGGG-ACAGTGGATGTCTCTGCTGAG-ATTACATCAAATAGTAAAC-CTCGAGCCAAAGC 1679
Query 999 CAAATC-TC-AT-TC-TGT-CAAAA-CCACTCTCAAAGA----TGAGGC-A--GC-AA-A 1043
||||| || | || | | | ||| ||||| | ||||| ||| | | | || |
Sbjct 1680 AAAATCCTCGAAATCATCTACCAAAGCCACTTT-AAAGAAAAATGACTCTAATGATAAGA 1738
Query 1044 AGC-TGA--T--A----GTGAAAAATCA-C-GCTCA-ACTCCT-CCCTCAACTGAAGAGA 1090
| | | | | | | ||| | ||| | ||| |||| | ||| |||| || ||||
Sbjct 1739 A-CATAAAATCCAACCAGGGAACA-TCATCTGCTGTGACTC-TGCCCCCAACAGAGGAGA 1795
Query 1091 TCGATCCCATGCAAGGTTTGGGGATCGATGATGA-ATTGAAGGACGTGGGGTTTCTTCCT 1149
| ||||| ||||||||| || || |||||||| || |||||| ||||| |||||||||
Sbjct 1796 TTGATCCGATGCAAGGTCTGTCAATGGATGATGAGAT-GAAGGATGTGGGATTTCTTCCT 1854
Query 1150 CCAATTGTATCACTTGATGAATTCATGGAATCTCTAGA-CTCTGAGCCTCCATTTGAAAG 1208
||||||||||| |||||||| ||||||||||| || || ||| || |||||||||| ||
Sbjct 1855 CCAATTGTATCCCTTGATGAGTTCATGGAATCCCT-GAACTCAGAACCTCCATTTGGCAG 1913
Query 1209 TCCGCATGGTA-AT--TC-TG-AAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCTGAA 1263
||| |||| | || || || ||| | || | || | |||||||| ||||| ||| ||
Sbjct 1914 TCCACATGA-ACATCCTCCTGGAAAGGAAGATC-CTGCATCTGAGAAGAGTGACTCTAAA 1971
Query 1264 GCTGGGTCAGACTCAAAATCTCCTA-AAGGATCTCCTAAGGAA-C-C-AA-GT----GA- 1313
| ||||||| | |||||||| ||| ||| |||||||||| | | | || | ||
Sbjct 1972 GATGGGTCACATTCAAAATCACCTTCAAG-ATCTCCTAAGCAGTCTCCAAAGGAACCGAG 2030
Query 1314 TAAAAG--T-T-TGCCTGAACCAAAAC-CAGAAAAGATTGATG-AAGTGTCCCCGAAGGT 1367
| | || | | | | | || || ||| | ||||||| | ||| || | ||||| ||
Sbjct 2031 TGAGAGCGTCTCTTC-TAAAACAGAACTC-GAAAAGACTAATGTAATT-TCCCCAAAACC 2087
Query 1368 TGATGCCAACGTCAAAGTTGATGACGATGTCGCTAGACTTGAGAAA-ACATCTGCACTTA 1426
|||||| | | || | || | |||||| | | || ||| ||| |||||| ||
Sbjct 2088 TGATGCTGGTGACCAACTCGACGGTGATGTCTCCAAACCTGA-AAATACATCT----TTG 2142
Query 1427 GT-GAT-G-AT-AAGGGAGAAA-GAGCATGGGATGGAATACTGCAACTGAGTAT--GTCT 1479
|| ||| | || || | || | || ||||||||| ||| |||| || ||| | | ||
Sbjct 2143 GTTGATAGCATTAAAG-AGGATCGAATATGGGATGGTATATTGCAGCTTAGT-TCCG-CT 2199
Query 1480 TCCGTAGTCCCTGTCACTGGCATTTTCAAAAGTGGTGAGAAAGCAGAGACGAGCGAGTGG 1539
|| || ||| | |||||||| |||||||| ||||||||||||||| |||| |||||||||
Sbjct 2200 TCAGTTGTCTCAGTCACTGGAATTTTCAAGAGTGGTGAGAAAGCAAAGACAAGCGAGTGG 2259
Query 1540 CCGGCGATGGTGGAAGTTAAGGGTAGAGTTAGGCTAAGTGGGTTTGGGAAGTTTATTCAA 1599
|| | |||||||| || ||||||||||| || || |||| ||||||||||||| | ||
Sbjct 2260 CCAACAATGGTGGAGGTAAAGGGTAGAGTGAGACTCAGTGCGTTTGGGAAGTTTGTAAAA 2319
Query 1600 GAGCTTCC-TAAGTCTCGAACCCGTGCCCTAATGGTAATGTACTTGGCTTGTAAAGAC-G 1657
|||||||| | |||||||| ||||| | ||||||||||| || ||| ||| || || |
Sbjct 2320 GAGCTTCCGTT-GTCTCGAAGCCGTGTCTTAATGGTAATGAACGTGGTTTGCAA-GAATG 2377
Query 1658 GCATTTCTGAGAGCCAGCGTGGA-AGCCTTATTGAGGTTATTGATTCCTACGTTGCTGAT 1716
| || ||| ||||||| |||| | ||||| ||||||||| | | || ||||| |||||
Sbjct 2378 GTATCTCTCAGAGCCAACGTG-ATAGCCTAATTGAGGTTGCTAAGTCATACGTAGCTGAC 2436
Query 1717 CAGAGAGTTGGCTACGCAGAGCCAGCCTCAGGAGTGGAGCTTTACCTTTGCCCAACACGT 1776
|| |||||||| |||||||| ||| |||| || || ||||||||||| || ||||||| |
Sbjct 2437 CAAAGAGTTGGTTACGCAGAACCAACCTCGGGCGTTGAGCTTTACCTCTGTCCAACAC-T 2495
Query 1777 GGC-GAGACTCT-GGATTTGCTAAGCAAAGTCATCTCTCAAGAAC-AGCTCGATGAGGTC 1833
|| || || || ||||||| | |||||| ||||||| |||| | | || |||||||||
Sbjct 2496 GGGTGAAAC-CTTGGATTTGTTGAGCAAAATCATCTC-CAAGGATTATCTTGATGAGGTC 2553
Query 1834 AAGTCTTT-G--GATATTGGATTGGTTGGAGTTGTTGTGTGGAG 1874
|||| || | ||||| || ||| |||| ||||||||||||||
Sbjct 2554 AAGTGTTCAGAAGATATCGGGTTGATTGGTGTTGTTGTGTGGAG 2597
> AT3G29639.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SPOC domain / Transcription elongation factor S-II
protein (TAIR:AT5G11430.1); Has 45 Blast hits to 45 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:11478732-11479749 REVERSE LENGTH=562
Length=562
Score = 313 bits (169), Expect = 6e-84
Identities = 192/203 (95%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 1433 ATAAGGGAGAAAGAGCATGGGATGGAATACTGCAACTGAGTATGTCTTCCGTAGTCCCTG 1492
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1 ATAAGGGAGAGAGAGCATGGGATGG-TTACTGCAACTGAGTATGTCTTCCGTAGTGCCTG 59
Query 1493 TCACTGGCATTTTCAAAAGTGGTGAGAAAGCAGAGACGAGCGAGTGGCCGGCGATGGTGG 1552
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 TTGCTGGCATTTTCAAAAGTGGTGAGAAAGCAGAAACGAGCGAGTGGCCGGCGATGGTGG 119
Query 1553 AAGTTAAGGGTAGAGTTAGGCTAAGTGGGTTTGGGAAGTTTATTCAAGAGCTTCCTAAGT 1612
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 120 AAGTTAAGCGTAGAGTTAGGCTGAGTGGGTTTGGGAAATTTATTCAAGAGCTTCCCAAGT 179
Query 1613 CTCGAACCCGTGCCCTAATGGTA 1635
|||||||||||||||||||||||
Sbjct 180 CTCGAACCCGTGCCCTAATGGTA 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122056172319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5