BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350357
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11620.1 | Symbols: | SWIM zinc finger family protein / mit... 1221 0.0
> AT5G11620.1 | Symbols: | SWIM zinc finger family protein / mitogen-activated
protein kinase kinase kinase (MAPKKK)-related
| chr5:3739013-3740146 REVERSE LENGTH=904
Length=904
Score = 1221 bits (661), Expect = 0.0
Identities = 772/825 (94%), Gaps = 9/825 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTGTCGGATCCAATCAAATATCTCCGTTCGTCAGTAACCGTGACCAACGGCAT 60
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 20 ATGGAATCTGTCGGATCCAATCAAATATCCCCGTACGTAAGTAACCGTGACCAACGGCAT 79
Query 61 TTCTTGGCTCAACCGGTTGCAGATAGGATACTTCGAGCTCTCCGTCACCGAATCCGTCTT 120
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 80 TTCTTGGCTCAACCGGTGGCAGATAGGATACTTCGAGCTCTCCGTCACCGGATCCGTCTT 139
Query 121 CTCCACCGTCCAAATGCCGGAACTTTTCACGTTCTCGGTGCAACGTGTAACGTCTACACC 180
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 140 CTCCACCGTCCTAATGCAGGAACTTTTCACGTTCTTGGTGCAACGTGTAACGTCTACACA 199
Query 181 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 259
Query 241 ATCTTGTTTGTCTTAATTCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 ATCTTGTTTGTCTTAATCCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 319
Query 301 CGGAGGCTCCGGCCATGTCTACTCTTCCGTCTCTTCTCTGCCCCGACCCGGCCTGACTGC 360
||||| |||||| |||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 320 CGGAGACTCCGGACATGCCTCCTCTTCCACCTCTTCTCTGCCCCGACACGGCCTGACTGC 379
Query 361 CTCGCCAGTTTCCGCCTCCAGCAACGGTTTCTTCAGCTTTTCTCAGCCGCCACTTCTCAA 420
|||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 380 CTCGCCAGTTTCCGCCTCCAACAACGGTTTCTTCAGCTTTTCCCAGCCACCACTTCTCAA 439
Query 421 CCCGGCTATACTACTAA-TGCA---TCCTCCACCAGTAAAATGGAAAATGAGGTGGACGA 476
||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct 440 CCCGGCTATACTACTAACT-CATCCTCCTCCACCAGTAAAATGGAAAATGAGGTGGATGA 498
Query 477 AGAGCCGGCAACATGTCCAATATGTCTAGACGATATTGA-CGCCACAAAAAACGTAAACG 535
||||||||||||||||||||||||||||||||||||| | ||| | | |||||||| |||
Sbjct 499 AGAGCCGGCAACATGTCCAATATGTCTAGACGATATT-ATCGCAATAGAAAACGTAGACG 557
Query 536 GTGAAAATGGTGGAGGTG-AGGAGAAGGAAATCGTGGTGGTGAAGTGCAGAGTCTGCAAG 594
||| |||||||||||| | |||||||||||| || |||||||||||||||||| ||||||
Sbjct 558 GTGGAAATGGTGGAGG-GAAGGAGAAGGAAACCGCGGTGGTGAAGTGCAGAGTATGCAAG 616
Query 595 AACAAGGTTCATGAAGAATGCATGCTGGCGTGGAGGAGGAGTCGTGGACGGCGGCCGGGC 654
|||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 617 AACAAGGTTCATGATGAATGCATGCTGGCGTGGAGAAAGAGTCGTGGACGGCGGCCGGCC 676
Query 655 ATCTGCGTGGTATGTCGTGCACGGTGGCCAGCCAATAGTTCTAGTAAAAATCCTAATGTT 714
||||| |||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 677 ATCTGTGTGGTATGCCGTGCACGGTGGCCAGCAAATAGATCGAGTAAGAATCCTAATGTT 736
Query 715 GGTGGTAATTACGAGAACTGCCACGGTAATTGTTACTTGAATCTAGCTCCTTACGTTGAT 774
|||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 737 GGTGATAATAACGAGAACTGCCACGGTAATTGTTATTTGAATTTAGCTCCTTACGTTGAT 796
Query 775 GAGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGCCCATGTTGA 819
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 797 GAGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGGCCATGTTGA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5