BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350357 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT5G11620.1 | Symbols: | SWIM zinc finger family protein / mit... 1221 0.0 > AT5G11620.1 | Symbols: | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related | chr5:3739013-3740146 REVERSE LENGTH=904 Length=904 Score = 1221 bits (661), Expect = 0.0 Identities = 772/825 (94%), Gaps = 9/825 (1%) Strand=Plus/Plus Query 1 ATGGAATCTGTCGGATCCAATCAAATATCTCCGTTCGTCAGTAACCGTGACCAACGGCAT 60 ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| Sbjct 20 ATGGAATCTGTCGGATCCAATCAAATATCCCCGTACGTAAGTAACCGTGACCAACGGCAT 79 Query 61 TTCTTGGCTCAACCGGTTGCAGATAGGATACTTCGAGCTCTCCGTCACCGAATCCGTCTT 120 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 80 TTCTTGGCTCAACCGGTGGCAGATAGGATACTTCGAGCTCTCCGTCACCGGATCCGTCTT 139 Query 121 CTCCACCGTCCAAATGCCGGAACTTTTCACGTTCTCGGTGCAACGTGTAACGTCTACACC 180 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 140 CTCCACCGTCCTAATGCAGGAACTTTTCACGTTCTTGGTGCAACGTGTAACGTCTACACA 199 Query 181 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 259 Query 241 ATCTTGTTTGTCTTAATTCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 260 ATCTTGTTTGTCTTAATCCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 319 Query 301 CGGAGGCTCCGGCCATGTCTACTCTTCCGTCTCTTCTCTGCCCCGACCCGGCCTGACTGC 360 ||||| |||||| |||| || ||||||| ||||||||||||||||| |||||||||||| Sbjct 320 CGGAGACTCCGGACATGCCTCCTCTTCCACCTCTTCTCTGCCCCGACACGGCCTGACTGC 379 Query 361 CTCGCCAGTTTCCGCCTCCAGCAACGGTTTCTTCAGCTTTTCTCAGCCGCCACTTCTCAA 420 |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| Sbjct 380 CTCGCCAGTTTCCGCCTCCAACAACGGTTTCTTCAGCTTTTCCCAGCCACCACTTCTCAA 439 Query 421 CCCGGCTATACTACTAA-TGCA---TCCTCCACCAGTAAAATGGAAAATGAGGTGGACGA 476 ||||||||||||||||| | || |||||||||||||||||||||||||||||||| || Sbjct 440 CCCGGCTATACTACTAACT-CATCCTCCTCCACCAGTAAAATGGAAAATGAGGTGGATGA 498 Query 477 AGAGCCGGCAACATGTCCAATATGTCTAGACGATATTGA-CGCCACAAAAAACGTAAACG 535 ||||||||||||||||||||||||||||||||||||| | ||| | | |||||||| ||| Sbjct 499 AGAGCCGGCAACATGTCCAATATGTCTAGACGATATT-ATCGCAATAGAAAACGTAGACG 557 Query 536 GTGAAAATGGTGGAGGTG-AGGAGAAGGAAATCGTGGTGGTGAAGTGCAGAGTCTGCAAG 594 ||| |||||||||||| | |||||||||||| || |||||||||||||||||| |||||| Sbjct 558 GTGGAAATGGTGGAGG-GAAGGAGAAGGAAACCGCGGTGGTGAAGTGCAGAGTATGCAAG 616 Query 595 AACAAGGTTCATGAAGAATGCATGCTGGCGTGGAGGAGGAGTCGTGGACGGCGGCCGGGC 654 |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| | Sbjct 617 AACAAGGTTCATGATGAATGCATGCTGGCGTGGAGAAAGAGTCGTGGACGGCGGCCGGCC 676 Query 655 ATCTGCGTGGTATGTCGTGCACGGTGGCCAGCCAATAGTTCTAGTAAAAATCCTAATGTT 714 ||||| |||||||| ||||||||||||||||| ||||| || ||||| |||||||||||| Sbjct 677 ATCTGTGTGGTATGCCGTGCACGGTGGCCAGCAAATAGATCGAGTAAGAATCCTAATGTT 736 Query 715 GGTGGTAATTACGAGAACTGCCACGGTAATTGTTACTTGAATCTAGCTCCTTACGTTGAT 774 |||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 737 GGTGATAATAACGAGAACTGCCACGGTAATTGTTATTTGAATTTAGCTCCTTACGTTGAT 796 Query 775 GAGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGCCCATGTTGA 819 ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 797 GAGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGGCCATGTTGA 841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5