BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350377 Length=798 Score E Sequences producing significant alignments: (Bits) Value AT5G11840.1 | Symbols: | Protein of unknown function (DUF1230)... 1243 0.0 > AT5G11840.1 | Symbols: | Protein of unknown function (DUF1230) | chr5:3813449-3814805 REVERSE LENGTH=959 Length=959 Score = 1243 bits (673), Expect = 0.0 Identities = 756/797 (95%), Gaps = 2/797 (0%) Strand=Plus/Plus Query 1 ATGGCTGCTACAGTGCTCGGCCATTTCAGTCCAATTACATCGTCCCTAAAACCACCGTCT 60 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTGCAACAGTGCTCGGCCATTTCAGTCCAATTACATCGTCCCTAAAACCACCGTCA 60 Query 61 CGCCACCGGAGATTCCTACACCACAATTTATTCCCCAAAATACCCCTTCCCTCTTCTCTT 120 ||||||||| ||||||||||||||||||| | |||||||| |||||||| ||||||||| Sbjct 61 CGCCACCGGCGATTCCTACACCACAATTTGTCCCCCAAAACACCCCTTCAATCTTCTCTT 120 Query 121 ATCAAATTCGGCGCCGAGAACTCCGAACCCCAACCTCCACCGCCGTTGCCGGAAACAGAT 180 ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| Sbjct 121 ATCAAATTCGGCGCCGAAAACTCCGAACCTCAACCTCCACGGCCGTTGCCGGAAACTGAT 180 Query 181 TGTCCCGTTCCGCCGGAACAGCAGCCAATCAACGAGTATCAATCTCTCTCCACCTCTTTC 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTCCCGTTCCGCCGGAGCAGCAGCCAATCAACGAGTATCAATCTCTCTCCACCTCTTTC 240 Query 241 CCTTTCTCCTGGGCTTCAGGAGATCTAGTCGAGTACTCGACAAGGCTCTTCTTCACCGGC 300 ||||||||||||||||||||||||||| |||||||||| || || || ||||| |||||| Sbjct 241 CCTTTCTCCTGGGCTTCAGGAGATCTAATCGAGTACTCTACCAGACTTTTCTTAACCGGC 300 Query 301 GCTTCTTTCGCTTTTTTCGTCGGGTTACCCGTTTCCTGGTTCGGATCCATCGGACCCGAA 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTTCTTTCGCATTTTTCGTCGGGTTACCCGTTTCCTGGTTCGGATCCATCGGACCCGAA 360 Query 361 TACGAACCCGTTAAGAGAATTCTCGCCGCCAGCTCTAGTGGGATCTTCGTTGTTACGCTT 420 || ||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 361 TATGAACCTGTTAAGAGGATTCTCGCCGCCAGCTCTAGCGGGATCTTCGTTGTCACGCTT 420 Query 421 GCTGTTGTAAGGATGTATCTTGGTTGGGCTTATGTCGGTAATCGTCTTCTTAGTGCCACC 480 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 GCTGTCGTAAGGATGTATCTTGGTTGGGCTTATGTCGGTAATCGTCTTCTTAGCGCCACC 480 Query 481 GTCGAGTATGAAGAAACTGGGTGGTATGATGGTCAGGTATGGGTGAAAACACCTGAAGTC 540 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 481 GTCGAGTATGAAGAAACTGGTTGGTACGATGGTCAGGTATGGGTGAAAACACCAGAAGTC 540 Query 541 TTGGCACGAGACCGTCTTCTTGGATCTTTCTCGGTAAAACCAGTCCTTGCCAGATTGAAA 600 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| Sbjct 541 TTGGCACGAGACCGTCTTCTTGGATCTTTCTCGGTAAAGCCAGTTCTTGCGAGACTGAAA 600 Query 601 AACACGCTAGTTATTCTCGGATTATCGCTCATTCTTGTCATAAACCTTGGTGATTCTCCA 660 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 601 AACACGCTAGTTATTCTCGGATTATCGCTCATTCTTGTTATAAACCTTGGTGATTCTCCA 660 Query 661 ATTGCATCGTCTTATAGAACATACAAGGATCCTAGGGACAGATCCTCCCTGCCAATCCCA 720 |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 661 ATTGCAACGTCTTATAGAACATACAGGGATCCTAGGGACAGATCCTCGCTGCCAATCCCA 720 Query 721 GGAGCGTACAATGATGAAACCGCAAGAACGTTT-GAACCAGAAGCTTTCTGCGGTGAACC 779 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 721 GGAGCGTACAATGATGAAACCGCAAGAAC-TTTCGAACCAGAAGCTTTCTGCGGTGAACC 779 Query 780 GTCTTCCGATCTTCTTT 796 |||||||||||||||| Sbjct 780 ATCTTCCGATCTTCTTT 796 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38830995631 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5