BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350399
Length=3609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 3864 0.0
AT5G12090.1 | Symbols: | Protein kinase superfamily protein | ... 992 0.0
> AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911363-3914080 FORWARD LENGTH=2718
Length=2718
Score = 3864 bits (2092), Expect = 0.0
Identities = 2380/2518 (95%), Gaps = 24/2518 (1%)
Strand=Plus/Plus
Query 1094 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 71
Query 1154 CCGTCAAGTTCACTGAGTCTTTCTCAGCATCATGCTCA--T-GTCGTCTCTTCTCAGCCT 1210
|||||||||||||||| ||| |||||| |||||||| | ||||||||||||| ||||
Sbjct 72 CCGTCAAGTTCACTGACTCTGTCTCAG---CATGCTCATGTCGTCGTCTCTTCTCTGCCT 128
Query 1211 CCACCGACCCCGAATCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCG 1270
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 129 CCACCGACCCCGAACCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCA-C- 186
Query 1271 GAGACGAAGAGCGACACGAAAAGCTAAGGAATCTCCGAGTTCTTCTTCAGCAGAATCGAA 1330
|| || | ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 187 ----CG--GA--G--ACGAAAAGCTACGGAATCTCCGAGTTCTTCTCCAGCAGAATCGAA 236
Query 1331 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCGTTCACAT 1390
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 237 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCTTTCGCAT 296
Query 1391 CGCCGAAAGAGCTCTTCTCTGCCTTCGCGCTATCATCTCCGTCGTTGAAACACGATTTCT 1450
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 297 CGCCGAAAGAGCTCTTCTCCGCCTTCTCGTTATCATCTCCGTCGTTGAAACACGATTTCT 356
Query 1451 CCTACATGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 1510
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTACTTGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 416
Query 1511 TGTTCTTCGCTTTGAGGAATGAAGGTATTTTTCCCAGCTCAGATTCGTTAACGCTTTTGC 1570
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGCTCAGATTCGTTAACGCTTTTGC 476
Query 1571 TTGATCATCTTGTGAAGACAAAACAATTCAGAGTGACTATAAACGTATTTTTGAATATTC 1630
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 477 TTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACTATAAACGTGTTTTTGAACATTC 536
Query 1631 TGGAATCGGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTCA 1690
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 TCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTGA 596
Query 1691 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAATCGGATGAAGCACGATAGAATCT 1750
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAACCGGATGAAGCACGATAGAATCT 656
Query 1751 CTCCCACTGTGTTTATATACAATGTCCTTATTGATGGGTTATGTAAAGTGAGACA-GATG 1809
||||| ||||||||| |||||||||||||||||||| || ||||||| || | | ||||
Sbjct 657 ATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGATTGTGTAAAGGGA-AAAGGATG 715
Query 1810 AAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGCTACCTTCTTTGATA 1869
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 AATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGTTACCTTCTTTGATA 775
Query 1870 ACGTACAACACGTTGATCGACGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 1929
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 776 ACGTATAACACGTTGATTGATGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 835
Query 1930 GTGAGAGAACGTATGAAAGCGGATAATATCGAACCGAGTCTTATTACGTTTAATACTTTG 1989
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 GTGAGAGAACGTATGAAAGCGGATCATATCGAACCGAGTCTTATTACGTTTAATACTTTG 895
Query 1990 CTTAAGGGACTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 2049
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTTAAGGGGCTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 955
Query 2050 AAGGATCAGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 2109
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAGGATCTGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 1015
Query 2110 AGTAACGATAAAGCTGATGCTGCTTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 2169
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGTAACGAGAAAGCTGAGGCTGCGTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 1075
Query 2170 AAAATGAATGCTTATACTTGTAGCATATTGCTGAATGCGTTGTGCAAAGAGGGAAAGATA 2229
|||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1076 AAAATGAATGCTTATACTTGTAGCATTTTGTTGAATGCGTTGTGCAAAGAAGGAAAGATC 1135
Query 2230 GAGAAGGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACAAGGTT 2289
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 GAGAAAGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACGAGGTT 1195
Query 2290 ATTTATAACACAATGATTGATGGATACTCTCGGAAAGGTGATCTAGTTGGAGCTCGGATG 2349
||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||| |||
Sbjct 1196 ATTTATAACACTATGATTGATGGATACTGTCGAAAAGGTGATCTGGTTGGTGCTCGTATG 1255
Query 2350 AAAATCGATGCCATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGT-TCAATTGTTT 2408
||||| || || ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1256 AAAATTGAAGCAATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGTAT-AATTGTTT 1314
Query 2409 GATTAGGACATTTTGTGAATTGGGGGATATGGATAATGCTCAGCAAGAGGTTAACAAAAT 2468
|||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 1315 GATTAGGAGATTTTGTGAATTGGGGGAAATGGAGAATGCTGAGAAAGAGGTTAACAAAAT 1374
Query 2469 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 2528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 1434
Query 2529 GAGAAAGTATGAATTTGATAAGTGCTTCGACCTTCTTAAAGAAATGGAAGACATCGGGAC 2588
|||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 1435 GAGAAAATATGAATTTGATAAGTGCTTCGACATTCTTAAAGAAATGGAAGATAACGGGAC 1494
Query 2589 GATGCCGAATGTTGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 2648
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AATGCCGAATGTAGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 1554
Query 2649 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGACAGAGGGGTTTCACCGAATGTAAG 2708
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1555 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGATAGAGGGGTTTCACCGAAAGTAAG 1614
Query 2709 GATATATAACATGCTTATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 2768
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GATATATAACATGCTAATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 1674
Query 2769 GTTCTCTGAGGAGATGTTCAAAAAGGGAATAGAATTAAATCTGGTGACTTATAACACCCT 2828
||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1675 GTTTTCTAAGGAGATGCTCAAAAAGGGAATAGAATTAAACCTGGTGACTTATAACACCCT 1734
Query 2829 CATTGATGGGTTGTCCATGAACGGGAAATTAGCAGAAGCTGAAGACATGCTTCTCGAAAT 2888
|||||||||||||||||||| ||| |||||| |||||||||||||| | ||||| |||||
Sbjct 1735 CATTGATGGGTTGTCCATGACCGGAAAATTATCAGAAGCTGAAGACTTACTTCTTGAAAT 1794
Query 2889 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATACAG 2948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1795 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATATGG 1854
Query 2949 ATTTGCTGGAAACGTGCAAAGATGTATCGCGCTGTATGAAGAGATGAAGGGATCAGGAAT 3008
||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1855 ATTCGCTGGAAACGTGCAAAGATGTATCGCGCTCTATGAAGAGATGAAGAGATCAGGAAT 1914
Query 3009 AAAACCCACTCTGAAGATATATCATCTTTTGATCAGTTTGTGCACCAAGGAGGGGATAGA 3068
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1915 AAAACCCACTCTGAAGACATATCATCTTTTGATCAGTTTGTGTACCAAGGAGGGGATAGA 1974
Query 3069 GCTCACAGAGAAAATATTTGGAGAGATGTCGTTGAAACCAGACTTATTAGTTTACAATGG 3128
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1975 GCTCACAGAGAGATTATTTGGAGAGATGTCATTGAAACCAGACTTATTAGTTTACAATGG 2034
Query 3129 GGTTCTCCATTGCTATGCCGTACATGGAGATATGGATAAGGCTTTTAATTTGCAGAAGCA 3188
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2035 GGTTCTCCATTGCTACGCCGTACATGGAGACATGGAAAAGGCTTTTAATTTGCAGAAGCA 2094
Query 3189 GATGATTGAAAAGAGTATTGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 3248
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 GATGATTGAAAAGAGTATCGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 2154
Query 3249 ACTGAAGCTAGGAAAACTGTGTGAGGTTAGGAGTTTGATTGACGAGATGAAAGCCCGGGA 3308
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2155 ACTGAAGGTAGGAAAACTGTGCGAGGTTAGGAGTTTGATTGACGAGATGAATGCCCGGGA 2214
Query 3309 AATGGAACCTGAAGCTGATACATATGACATAATAGTGAAGGGGCATTGTGAGATGAAGGA 3368
||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||| ||
Sbjct 2215 AATGGAACCTGAAGCTGATACATATAACATAATAGTGAAAGGGCATTGCGAGGTGAAAGA 2274
Query 3369 TTATATGGGAGCATATGTTTGGTACAGAGAGATGCAAGAGAAAGGTTTGCTATTAGATGT 3428
||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 2275 TTATATGAGTGCATATGTTTGGTACAGAGAGATGCAAGAGAAGGGTTTTCTGTTAGATGT 2334
Query 3429 TTGCATAGGCGATGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 3488
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 TTGCATAGGCAACGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 2394
Query 3489 GAATGTCATTTCTGAAATGAATGGTCGCAAGCTAGGTGATGTAATAGTGGATGAGGATCT 3548
|| |||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 2395 GATTGTCATTTCTGAGATGAATGGTCGCATGCTAGGTGATGTAACAGTGGATGAAGATCT 2454
Query 3549 ATCTGCAACAGAGAGAAGCTTTGAAAATCAAGAATGTGTGCTTCAAGATAAATACTTT 3606
|||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2455 ATCTGCAACAGAGA-A-GCTTTGAAAATCAATAATGTGTGCTTCAAGATAAATCCTTT 2510
> AT5G12090.1 | Symbols: | Protein kinase superfamily protein
| chr5:3909703-3910877 FORWARD LENGTH=1110
Length=1110
Score = 992 bits (537), Expect = 0.0
Identities = 723/811 (89%), Gaps = 19/811 (2%)
Strand=Plus/Plus
Query 51 CAAATTCTTAGGAAAAGGTGCTTACGGTTCGGTTGATCTCATCAAATACACTAAAACTGA 110
||||||||| |||||||||| ||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 90 CAAATTCTTGGGAAAAGGTGTTTATGGTTCTGTTGATCTCATCAGATACACTAAAACCGA 149
Query 111 TGGATCCTCGTTTCTGGCCGCCGTAAAAACATCTTACGCTG-AGATACTCGAAGATTACA 169
||| |||||||| | ||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 150 TGGTTCCTCGTTACAAGCCGCCGTAAAAACATCTTACGCTGAAGAT-CTCGAAGAATACG 208
Query 170 ACGCTCTCAAAAGAGAGATTCAGATTTTGTCTGAACTCAAAGGATATCCGAACATCGTTA 229
|||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||
Sbjct 209 ACGCGCTCAAAAGAGAGATACAGATTCTGTCTGAACTCAAGGGATATCCCAACATCGTTA 268
Query 230 TATGTTATGAAGACGATTTGGAAGAAGGTTTCAACGATCACGGACATC-AAGTTTACAAG 288
| || |||| ||||||||||||||||| ||||||||| |||||||| | ||||||||||
Sbjct 269 TTTGCTATGGAGACGATTTGGAAGAAGATTTCAACGAACACGGACA-CAAAGTTTACAAA 327
Query 289 TTGCTTCTCGAGTACGCAAACGAAGGGAGTCTACGTTCTTTCATGGAAAATTATACGGAC 348
|||||||| || |||||||||||||||||| || |||| |||||||| |||||| | |||
Sbjct 328 TTGCTTCTTGAATACGCAAACGAAGGGAGTTTAAGTTCATTCATGGAGAATTATCCCGAC 387
Query 349 AAAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGTATGATTCTCGAAGGATTGGTC 408
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 388 AGAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGATTGGTC 447
Query 409 TCAATTCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC 468
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCAATGCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC 507
Query 469 TCTCGGAAAGATGCTTCTTCGTACGAGTTGAAGATTTCTGATTTCGGAAACTGTAGAGAA 528
|||||||||||| || |||||| |||||| ||||||| |||||| |||||||||||| ||
Sbjct 508 TCTCGGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTGATTTTGGAAACTGTAGACAA 567
Query 529 GTCGGAGAAGTTCCGGATCACTGGGAAATTGATTTCCCGTTTGTGGGAACGCCTATTTAC 588
|||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| |
Sbjct 568 GTCGGAGAAGTTCCGGATCACTGGAAAAGTGATTACCCGTATGTGGGAACGCCTG---AG 624
Query 589 ATGCCGCCTGAGTCTCTCATCGACGGTGCTGCCaaaaaaaCCCTAGATTTGTGGTCGTTA 648
| | | | ||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 625 -T-C----T---T-TCT--TCGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCGTTA 672
Query 649 GGGTGCTTAGTGTTGGAGATGTATACAGGTGAGAAGCCATGGGCAGGGGTTGGAATTGTC 708
||||||||||||||| |||| |||||||||||| ||||||||| | | ||| | ||||
Sbjct 673 GGGTGCTTAGTGTTGAAGATTTATACAGGTGAGCAGCCATGGGAAAGAGTTACTAGTGTC 732
Query 709 GATCTCGTGAATTTTCTCAGTGATGGTGAAGCTCCAGATATCCCTGAGTGTGTGCCTTGT 768
||| ||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||||
Sbjct 733 GATTTCGTGAATTTTCTTAGTGATGGTGAAGCTCCAAATATTCCTGAATATGTGCCTTGT 792
Query 769 GATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACATGAGAAGAGAGGAAACGCG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 793 GATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACATGAGAAGAGAGGTACCGCG 852
Query 829 TCTGAGTTGATGTTGCATCCGTTTTTGTGTC 859
||||||||| | |||||||||||||||||||
Sbjct 853 TCTGAGTTGTTATTGCATCCGTTTTTGTGTC 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 179697989826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5