BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350409

Length=3426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06520.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/su...  76.8    1e-12


> AT5G06520.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp 
domain-containing protein | chr5:1987250-1989372 REVERSE 
LENGTH=2040
Length=2040

 Score = 76.8 bits (41),  Expect = 1e-12
 Identities = 91/116 (78%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  47    CACTCAAGGAGCTTGGTATTATTAAGCTCACGGCTCAGTTTGTGGTGCGTTATGGTCCGG  106
             ||||||||||||||||||||||||||||||| || |||||| ||| ||| || ||   | 
Sbjct  1451  CACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTATGGCGCGGTACGGGATGA  1510

Query  107   ATTTTCTGTTGCCTTTCAAGAGGACAGTGGATAAGAACCCTCTGTTTGACTTTTTG  162
             ||||| ||  |  ||| | || || ||||| |  |||||||| |||| | ||||||
Sbjct  1511  ATTTTGTGCAGGGTTTGAGGAAGAGAGTGGTTGGGAACCCTCAGTTTAAGTTTTTG  1566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 170517439257


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5