BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350417
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12270.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1670 0.0
> AT5G12270.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:3970131-3971301
REVERSE LENGTH=1083
Length=1083
Score = 1670 bits (904), Expect = 0.0
Identities = 1028/1087 (95%), Gaps = 11/1087 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCCCACCACCGACGAAATCGAAGTGAAAGATTTCGTGGTGAAACAAAAGAATGGA 60
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTCTCACCACCGACGAAATCGAAGTGAGAGATTTCGTGGTGAACCAAAAGAATGGA 60
Query 61 GTGAAAGGACTCGTCGACTTTCTAACCCTAACCACACTTCCTTCTCCATACATTCAACCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAAAGGACTCGTCGACTTTCTAACCCTAACCACACTTCCTTCTCCATACATTCAACCT 120
Query 121 CCTCAAGAACGCTTCACTTCCGACAAGATCCTCTTCGGATCACCTGTCCCGGTCATTGAC 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCTCAAGAACGCTTCACTTCCGACAAGATCCTCCTCGGATCACCTGTCCCGGTCATTGAC 180
Query 181 GTGTCCAATTGGAATGACCCGCACCTGGCTAGAGAGATCTGCCATGCAGCGACAAAGTTG 240
||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
Sbjct 181 GTGTCCAATTGGAATGAACCGCACGTGGCTAGAGAGATCTGCCATGCAGCGTCAAAGCTC 240
Query 241 GGTTTGTTTCAGATAGTGAACCACGGGATAGCTCCGGCGGAGTTGAAGGGTGTGATTGCG 300
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 GGCTTGTTTCAGATAGTGAACCACGGGATAGCTCCGGCTGAGTTCAAGGGTGTGATTGCT 300
Query 301 GCGGCGCGTGGGTTTTTCGAGTTGCCGGCCGAAGAAAGAAGAAGGTATTGGAGAGGGAGT 360
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 301 GCGGCGCGTGGGTTTTTCGAGTTGCCGGCGGAGGAGAGAAGAAGGTATTGGAGAGGGAGT 360
Query 361 TCGGTGTCGGAGACGGCGTGGTTGACCACAAGTTTCAATCCTTACA-AGGAGAGAGTTTT 419
|| |||||||||||||||||||||||||||||||||||||||| || || | || |||||
Sbjct 361 TCAGTGTCGGAGACGGCGTGGTTGACCACAAGTTTCAATCCTTGCATAGAA-AGTGTTTT 419
Query 420 GGAATGGAGAGATTTCCTCAAGTTTGAGTATCTTCCTCAACGACACGACTTCGCTGCCAC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GGAATGGAGAGATTTCCTCAAGTTTGAGTATCTTCCTCAACGACATGACTTCGCTGCCAC 479
Query 480 GTGGCCTTCCGTCTGCAAGGAACAAGTGATAGACCACTTCAAGAAG-ATCAAACCAATCA 538
||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 480 GTGGCCTTCTGTCTGCAAGGAACAAGTGATAGACCATTTCAA-AAGGATCAAACCAATCA 538
Query 539 CAGAGAAGATCTTAAACATACTCATCAACAATCTAAACTCAGTCATTGACGAGTCCAATA 598
|||||| ||||||||||||||||||||||||||||||| || |||| || ||||||||||
Sbjct 539 CAGAGAGGATCTTAAACATACTCATCAACAATCTAAACACAATCATCGATGAGTCCAATA 598
Query 599 AAGAAACTCTAATGGGAACAATGAGAATGAACTTCAACTACTATCCGAAATGTCCTGAGC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGAAACCCTAATGGGAACAATGAGAATGAACTTCAACTACTATCCGAAATGTCCTGAGC 658
Query 659 CAAGCCTGGCCATAGGAACTGGTCGCCACTCAGACATCAACACTATCACTCTCCTCCTGC 718
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 659 CAAGCCTGGCCATAGGAACTGGTCGCCACTCAGACATCAACACTCTCACTCTCCTCCTAC 718
Query 719 AAGAACACGGTGTATTAAGCAGTCTTTACGCCCGAGCCACCGAGGATGGTGACAAATGGA 778
||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 719 AAGAAGATGGTGTATTAAGCAGTCTTTACGCCCGAGCCACTGAGGATGGAGACAAATGGA 778
Query 779 TTAATGTCCCTCCAATTGCTGGAGCAATTG-CTGTTAATATTGGAGATGTATTACAGATA 837
|| |||||||||||||| | ||||| |||| | |||||||| ||||||||||||||||||
Sbjct 779 TTCATGTCCCTCCAATTCCGGGAGCTATTGTC-GTTAATATCGGAGATGTATTACAGATA 837
Query 838 TTGAGCAATGATAGGTATAGGAGCGTGGAGCATTGTGTGGTGGTCAATAAGTGTTGTAGC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TTGAGCAATGATAGGTATAGGAGCGTGGAGCATTGTGTGGTGGTCAATAAGTATTGTAGC 897
Query 898 CGGGTTTCCATTCCGGTTTTCTGCGGACCGGTTCATGATTCGGTTATTGAGCCGTTACCA 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGGGTTTCCATTCCGGTTTTCTGCGGACCGGTTCATGATTCGGTTATTGAGCCGTTACC- 956
Query 958 GG-GGTGTTAGA---GAACAATGAGATGGCTCGGTATAGAAAGACTGTGTATTCAGACTA 1013
|| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 957 GGAGGTGTTAGATAAGAACAATGAGATGGCTCGGTATAGAAAGATTGTGTATTCGGACTA 1016
Query 1014 TTTGAAGGGtttttttGGAAGACCTCATGATGGAAAGAAGACTATTGAGTCGATCAAATT 1073
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 CTTGAAGTTTTTTTTTGGAAGACCTCATGATGGAAAGAAGACTATTGAGTCGATAAAATT 1076
Query 1074 CCCATGA 1080
||||||
Sbjct 1077 ACCATGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5