BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350428

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12390.1 | Symbols: FIS1B | Tetratricopeptide repeat (TPR)-l...   832    0.0  


> AT5G12390.1 | Symbols: FIS1B | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr5:4010443-4012039 REVERSE LENGTH=1098
Length=1098

 Score =  832 bits (450),  Expect = 0.0
 Identities = 488/506 (96%), Gaps = 4/506 (1%)
 Strand=Plus/Plus

Query  1    ATGGACGCGGCGATAGGAAAGGTTTTCGATTCCGTCTCAGACTTCTTCTCCGGTGCTGCT  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  90   ATGGACGCGGCGATAGGGAAGGTTTTCGATTCCGTCTCAGACTTCTTCTCCGGCGCTGCT  149

Query  61   TCTGCTTCCGCCGATGAGTTCCCCTTGTGCGATTCCGACATCATCTCCGGATGTGAGAAA  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  150  TCTGCTTCCGCCGATGAGTTTCCCTTGTGCGATTCCGACATCATCTCCGGATGTGAGAAA  209

Query  121  GAACTTGCAGAGGCTCAAGACGAAGGACGTAAGAAGGAATGCATCATGCGTCTTTCATGG  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  210  GAACTTGCAGAGGCTCAAGACGAAGGACGTAAGAAGGAATGCATTATGCGTCTTTCATGG  269

Query  181  GCTCTTGTTCATTCAAAGATGCCTG-GTGATATTCAGCGTGGAATTGCAATGCTTGAAGC  239
            ||||||||||||||||||||||||  | |||||||||||||| |||||||||||||||||
Sbjct  270  GCTCTTGTTCATTCAAAGATGCCTTCG-GATATTCAGCGTGGGATTGCAATGCTTGAAGC  328

Query  240  TTTGGTGGTTAATGATACAAGTGCAATGAAACTTAGGGAGAAGCTATATCTCCTTGCTCT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  329  TTTGGTGGTTAATGATACAAGTGCAATGAAACTTAGGGAGAAGCTATATCTCCTTGCTCT  388

Query  300  TGGGTACTATCGAAGCGGTGACTTTTCAAGAAGCCGGGATTGTATAGAACGGTGTTTGGA  359
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  389  TGGTTACTATCGAAGCGGTGACTTTTCAAGAAGCCGGGATTGTATAGAACGGTGTTTGGA  448

Query  360  GGTTGAACCAGAGTGGGGGCAGGCTCAGACACTCAAAAAGGCTATAGAGGACCGTATTGT  419
            ||||||||| ||||  || ||||||||| |||||||||||||||||||||||||||||||
Sbjct  449  GGTTGAACCGGAGTCCGGACAGGCTCAGGCACTCAAAAAGGCTATAGAGGACCGTATTGT  508

Query  420  GAAAGATGGTGTGATTGGCGTTGGAATTGCTGTCACTGCTGTAGGGCTTGTTGCTGGTAT  479
            ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct  509  GAAAGATGGTGTGATTGGCGTTGGAATTGCTGTTACTGCTGTAGGGGTTGTTGCTGGTAT  568

Query  480  TGCTGCAGCCATTAT-ACGCAGCTAA  504
            |||||||||||| || ||||||||||
Sbjct  569  TGCTGCAGCCAT-ATTACGCAGCTAA  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5