BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350432
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12420.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 739 0.0
AT5G16350.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 165 7e-40
> AT5G12420.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:4024314-4026741 REVERSE LENGTH=1723
Length=1723
Score = 739 bits (400), Expect = 0.0
Identities = 582/666 (87%), Gaps = 27/666 (4%)
Strand=Plus/Plus
Query 1 ATGTCACGCCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCACATC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 ATGTCACGTCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCACATC 377
Query 61 CTTAACGTCAAAACTTCAGATGCTGAAGCAGTCAGTTTTATAAGATCTCACCATTCATTG 120
|||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 378 CTTAACGTCAAAACCTCAGAGGCTGAAGCAGTCGGTTTTATAAGATCTCACCATTCGTTG 437
Query 121 GGAGATGGAATGTCCTT-ATGTTCCCT-ATTACTCGGATGTACTCAAAAAACATCAGATC 178
|||||||||||||| || || |||||| || |||| |||||| || ||||||||||| |
Sbjct 438 GGAGATGGAATGTCTTTGAT-TTCCCTCATG-CTCGCATGTACCCATAAAACATCAGACC 495
Query 179 C-GAGCACGTCTTCTACTGCTATTCCACCCGTGAAACGGCA-AGGCGCGGTGTTGCATAG 236
| || || || ||| | |||||||||| || |||||||| | || | | ||| ||| ||
Sbjct 496 CAGA-CATGTTTTCAAATGCTATTCCATCCATGAAACGG-AGAGCCACAATGTCGCACAG 553
Query 237 CCTTAGAAAG-AAAGGCTGGTTCTTAAGGTCGATATTCACCATTGGTTCTACAATGACAT 295
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 554 CCTTA-AAACCAAAGGCTGGTTCTTGAGGTCGATATTCACCATTGGTTCTACAATGAGAC 612
Query 296 TGCTTTGGAATACAATTGTAGATGTGTTGCTGCTTTTGGCGACTATACTGTTTTTGAAGG 355
||||||||||||||| | ||||| ||||| ||||||||||||| | |||||||||| |
Sbjct 613 TGCTTTGGAATACAACTATAGATATGTTGTTGCTTTTGGCGACGGTGTTGTTTTTGAAAG 672
Query 356 ATACAAAAACACCTCTAAAAGGTGG--CTTGAATGTCAAGAGCAATCCAAAGAGATTTTA 413
|||||||||| || ||||||| ||| | || ||||| |||||||||||||||||||||
Sbjct 673 ATACAAAAACGCCACTAAAAGCTGGGGCA-GA-TGTCAGGAGCAATCCAAAGAGATTTTA 730
Query 414 TCACCGAATTGTGC-CTTTGGATGATATTAAACTTATAAAGAACGCGATGAACATGACTA 472
||| |||||| | | |||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 731 TCATCGAATTAT-CTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTA 789
Query 473 TCAACGATGTTATATTTGGAATCACACAAGCCTCTCTTTCTCAGTATTTGAACCGAAAGT 532
||||||||||| | || ||||| |||||||| ||||||||||| |||||||||||| |||
Sbjct 790 TCAACGATGTTCTGTTCGGAATTACACAAGCATCTCTTTCTCACTATTTGAACCGACAGT 849
Query 533 ATG--AC-AAGAAGGAGGAGGATGGAG-GATCACTGACATCGTATCAGAA-CAATCTTCC 587
||| || ||||||||||||||||||| | | |||||||||||| ||| |||||||||
Sbjct 850 ATGGCACGAAGAAGGAGGAGGATGGAGCG-T---TGACATCGTATC-GAAACAATCTTCC 904
Query 588 TGATGGAATACGATTTCATGTAGCTTGTACAGTAAATCTAAGGTCAGACATCGGCTTCAA 647
||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 905 TGATGGAATACGATTTCGTGTAGCTTGTACAGTAAATCTTAGGTCAGACATTGGCTTCAA 964
Query 648 GC-TTT 652
|| |||
Sbjct 965 GCCTTT 970
Score = 261 bits (141), Expect = 9e-69
Identities = 156/163 (96%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 642 CTTCAAGCTTTATTTT-TTGCCGTTCACCATCGGTTTAGAAACCGATCCATTGGTTTATC 700
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1016 CTTC-AGCTTTATTTTCTTGCCGTTCACCATCGGTTTACAAACCGATCCATTGGTTTATT 1074
Query 701 TAAAAATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGACTCTAGTAT 760
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1075 TAAAAATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGT 1134
Query 761 ATTTTATCATCAAAATCGTTCTAAAAGTGTTTGGCGCCAAGGC 803
||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 ATTTTATCATCAAAATCGTCCTAAAAGTGTTTGGCGCCAAGGC 1177
Score = 172 bits (93), Expect = 4e-42
Identities = 137/158 (87%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 802 GCATTGCTGGTGCATTTCATAAGTTATGCGGAGAAGATGATAATCTCGATGGCGGT-TGA 860
|||||| || | ||||| || ||||| ||||| || |||||||| ||| |||| || |||
Sbjct 1314 GCATTGTTGATACATTTAATGAGTTACGCGGATAAAATGATAATTTCGTTGGC-GTATGA 1372
Query 861 TCCTACTGTCATACCAGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAGC 920
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCCTACCGTCATATCAGACCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAGC 1432
Query 921 GATGAAAACTAT-TCTCTGTGAAAGAGGGTTACTATAA 957
|||||| || | ||||||||||||||| ||||| |||
Sbjct 1433 AATGAAAGCT-TCTCTCTGTGAAAGAGGTTTACTCTAA 1469
> AT5G16350.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:5352626-5355070 FORWARD LENGTH=1658
Length=1658
Score = 165 bits (89), Expect = 7e-40
Identities = 133/154 (86%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 802 GCATTGCTGGTGCATTTCATAAGTTATGC-GGAGAAGATGATAATCT-CGATGGCGGTTG 859
|||||| || | |||| || ||||||||| || ||| |||| ||| | | || ||||||
Sbjct 1370 GCATTGTTGATACATTACACAAGTTATGCTGGTGAA-ATGACAAT-TACTATAACGGTTG 1427
Query 860 ATCCTACTGTCATACCAGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAG 919
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 ATCCTACTGTAATACCGGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAA 1487
Query 920 CGATGAAAACTATTCTCTGTGAAAGAGGGTTACT 953
| |||||| || ||||||| ||||||||||||||
Sbjct 1488 CAATGAAAGCTGTTCTCTGGGAAAGAGGGTTACT 1521
Score = 126 bits (68), Expect = 3e-28
Identities = 133/163 (82%), Gaps = 9/163 (6%)
Strand=Plus/Plus
Query 647 AGCTTTATT-TTTTGCCGTTCA-CCATCGGTTTAGAAACCGATCCATTGGTTTATCTAAA 704
||||||||| |||| || || | | || |||||||||||||||||||||||||||||||
Sbjct 1076 AGCTTTATTATTTTACCATT-ATCGATTAGTTTAGAAACCGATCCATTGGTTTATCTAAA 1134
Query 705 -AATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGC-GACTCTAGTATAT 762
|| || ||| | ||||||||||||| ||||||||||||||| || | ||||| |||
Sbjct 1135 CAAA-TCCAAAGCTATGATGGCTCGAACGAAGCACTCTTATCAAGCAG-CTCTAACGTAT 1192
Query 763 TTTATCATCAAAATCGTTC-TAAAAGTGTTTGGCGCCAAGGCA 804
||| | |||||||| | | |||||||||| || || ||||||
Sbjct 1193 TTTCTTATCAAAATA-TCCCTAAAAGTGTTAGGAGCTAAGGCA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5