BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350435
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:43... 1483 0.0
AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:32... 137 2e-31
> AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:4341948-4344671
REVERSE LENGTH=2120
Length=2120
Score = 1483 bits (803), Expect = 0.0
Identities = 869/902 (96%), Gaps = 0/902 (0%)
Strand=Plus/Plus
Query 229 AAGCAAGGGGAGGAGCTCTTTGGAGATTACGAGTGGGAGAGGTTTGACTTACTGGTGCTA 288
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 866 AAGCAAGGGGAGAAGCTGTTTGGAGATTACGAGTGGGAGAGATTTGACTTACTGGTGCTG 925
Query 289 CCTCCGAGTTTTCCTTATGGAGGTATGGAGAATCCAAGAATGGTTTTCCTGACGCCTACT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CCTCCGAGTTTTCCTTATGGAGGTATGGAGAATCCAAGAATGGTTTTCCTGACGCCTACT 985
Query 349 GTTATCAGAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGG 408
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GTTATCAAAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGG 1045
Query 409 ACTGGGAATTTGATCACTAACATCAACAACGAACATTTCTGGTTGAATGAGGGATTTACA 468
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1046 ACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGGGATTTACA 1105
Query 469 ACTTACGCAGAGAGGAGAATTGTGGAAGTTGTCCAAGGGGCGGATAGAGCTACTCTGAAT 528
|||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||
Sbjct 1106 ACTTACGCAGAGAGGAGAATTGTGGAGGTTGTTCAAGGGGCGGATATAGCTACTTTGAAC 1165
Query 529 ATTGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACAACTTGGAG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 ATTGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACAACTTGGAG 1225
Query 589 TGCACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTATATTCTCAGGTC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TGCACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTATATTCTCAGGTC 1285
Query 649 CCATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAGCGCCAGATTGGAAGGACTGCA 708
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1286 CCATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAACGCCAGATTGGAAGAACTGCT 1345
Query 709 TTTGACGAATTCCTCAAGATATACATTGCTACTTTCAAGTTCAAGTCAATCGATGCAAAC 768
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1346 TTTGACGAATTCCTCAAGAAATACATTGCTACTTTCAAGTTCAAGTCAATCGATACAAAC 1405
Query 769 ACATTTCTTGAATTCCTGAAAGCAAACATCCCTGGCATAGAGAAAGAGATCAACCTACAG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1406 ACATTTCTTGAATTCCTGAAAGCAAACATCCCTGGCATAGAGAAAGAGATCAATCTACAG 1465
Query 829 CTGTGGACTGAGGGCGTTGGTATACCTGAGGATGCATATGAACTGGCCTCAACCATTTAC 888
|||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 1466 CTGTGGACTGAGGGCGTTGGTATACCAGAGGATGCATATGAACCAGTCTCAACCATTTAC 1525
Query 889 ACAAAGATCATATCCTTGGCAAAAGAGTTTAAGGAAGGAAGGATGCCAGGTGAGGATGAT 948
||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||
Sbjct 1526 ACAAAGATCATATCCCTGGCGAAAGAGTTTAAGGAAGGAAAGATGCCAAGTGAGGATGAT 1585
Query 949 GGTGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTACTAAATCATGT 1008
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1586 GTTGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTCCTAAATCATGT 1645
Query 1009 GAACCTTCTCAGGTCATGGCCTTGGACAAGCGGTACAGACTAGCAGAATCGAAGGACTAT 1068
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1646 GAACCTTCTCAGGTCATGGCCTTGGACAAGCGGTACAGACTGGCAGAATCGAAAGACTAT 1705
Query 1069 GAAGTGAAGGTCTCGTTTCTGCAGCTTGCAGTCGCATCCAAGTGCAGAGAGTACCATGGG 1128
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1706 GAAGTGAAGGTCTCGTTTCTGCAACTTGCAGTCACATCCAAGTGCAGAGAGTACCATGGG 1765
Query 1129 GA 1130
||
Sbjct 1766 GA 1767
> AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212689-3216466
REVERSE LENGTH=2030
Length=2030
Score = 137 bits (74), Expect = 2e-31
Identities = 76/77 (99%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1124 ATGGGGAGGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGAGAAGA 1183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 ATGGGGAAGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGAGAAGA 1768
Query 1184 CTCCAGCCATTGTTTGA 1200
|||||||||||||||||
Sbjct 1769 CTCCAGCCATTGTTTGA 1785
Score = 119 bits (64), Expect = 7e-26
Identities = 73/77 (95%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGCACTTTGTGATGGTTGTGAACAGTTTATGTGCTTCCCCCCAGGCCACATCTAT 60
|||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 529 ATGAAAGCACTTAGTGATGATTGTGAGCAGTTTATGTGCTTCCCCCCAGGCCACATCTAT 588
Query 61 TCAAGTAAACAAG-TGG 76
||||||||||||| |||
Sbjct 589 TCAAGTAAACAAGGTGG 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5