BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350449
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 944 0.0
> AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr5:3972014-3973636
REVERSE LENGTH=1260
Length=1260
Score = 944 bits (511), Expect = 0.0
Identities = 578/609 (95%), Gaps = 10/609 (2%)
Strand=Plus/Plus
Query 121 GTTACTGAATACCTTGCTAAGAATCAAGATGAAGGAGCTCAGGATATTCATCAACCTGAA 180
|||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 352 GTTAGTGAATACCTTGCTAAGAATCAAGATGAAGGAGCTCAGG---------AACCTGAA 402
Query 181 GCTCCAGCTACTCTTAAAGGTGATGCACAACACTATCTCCGGCCTCTTCCTTTAAGGGAT 240
||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||||| |||
Sbjct 403 GCTCCAGCTACCCTTAAAGGTGATGCACAACACTATCGCCGGCCTTTTCTTTTAAGCGAT 462
Query 241 CCGGCTTCCAAGTTCCCAGATTATGTTCTCCCTGAAGGATATACTATAGAGGATCTTGAT 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 463 CCGGCTCCCAAGTTCCCAGATTATGTTCTCCCTGAAGGATATACTATAGAGGATGTTGAT 522
Query 301 ACTATTATTCTCACAGCGCAGTTTGTGGGTCGGTACGGGGCGGAATTTTGGTTGGATTTG 360
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 523 ACTATTTTTCTCACAGCGCAGATTGTGGGTCGGTACGGGGAGGAATTTTGGTTGGATTTG 582
Query 361 ATGAAGGAAGTGGATAACAAACCTCAGTTTGAGTTTTTGAAGCCAGCTGACAGCAAGTTC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ATCAAGGAAGTGGATAACAAACCTCAGTTTGAGTTTTTGAAGCCAGCTGACAGCAAGTTC 642
Query 421 GATTATTTCAATCGGCTTTCTGTTGTGGCTTCGGAAGGACTAAAGCGATCCGAAAAGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GATTATTTCAATCGGCTTTCTGTTGTGGCTTCGGAAGGACTAAAGCGATCCGAAAAGCTG 702
Query 481 ACTAGTTCTCGTATGGCGATTGTTATTAAGGCTTTTTTCTACCATCTTCGTCGTAAAAAG 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 703 ACTAGTTCTCGTATGGCGATTGTTAGTAAGGCTTTTTTCTACCATCTTCGTCGTCAAAAT 762
Query 541 GAAAAGCGGGTGTTGAGCCACAAGGAGGGAGCGGCAAAGGCTAGTACTGTGTTTGGTGCT 600
|||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 763 GAAAAGCGGGAGTTGACCCACAAGGAGGGAGCGGCAAAGGCTTGTACTCTGTTTGGTGCT 822
Query 601 TTGTATGCTTTTGTGGGTGCTGATGGCTGCTTTGCTGACATCAAGGACGAAGATTTGCCA 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTGTATGCTTTTGTGGGTCCTGATGGCTGCTTTGCTGACATCAAGGACGAAGATTTGCCA 882
Query 661 CTACTTCAACACCCTTCAGCGATCAAGAACATACTAACAAAGCTGCAGCCTCGTATGCCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CTACTTCAACACCCTTCAGCGATCAAGAACATACTAACAAAGCTGCAGCCTCGTATGCCT 942
Query 721 CCACT-GGG 728
|| || |||
Sbjct 943 CCGCTTGGG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5