BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350459
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2916 0.0
> AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0061 (InterPro:IPR003846);
Has 5046 Blast hits to 4997 proteins in 1211 species:
Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134;
Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source:
NCBI BLink). | chr5:4133204-4136688 FORWARD LENGTH=2141
Length=2141
Score = 2916 bits (1579), Expect = 0.0
Identities = 1701/1759 (97%), Gaps = 11/1759 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTTCTCCGGCTTCGTCTTCGTCTCCGACGCCGGTAACCGATTCGTCTGCTGAT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 157 ATGGAATCTTCTCCGGCTTCTTCTTCGTCTCCGACGCCGGTAACCGATTCATCTGCTGAT 216
Query 61 ACTTTAGCGAAAGATCTGCAGAATCAAAGTCTTGGAGCTGTTGATGAAGGTTG-TAAGAT 119
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 217 TCTTTAGCGAAAGATCTGCAGAATCAAAGTCTGGGAGCTGTTGATGAAGG-TGTTAAGAT 275
Query 120 TAAAAAGAAGCTCGAAGATTTTAACTGGGACCATTCCTTTGTTAAGGAATTGCCTGGTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TAAAAAGAAGCTCGAAGATTTTAACTGGGACCATTCCTTTGTTAAGGAATTGCCTGGTGA 335
Query 180 TCCCAGAACCGATGTTATCTCGCGTGAGGTATTACATGCTTGCTATTCAAAAGTTTCACC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 336 TCCTAGAACCGATGTTATCTCGCGTGAGGTATTACATGCTTGCTATTCAAAAGTTTCCCC 395
Query 240 ATCAGTAGAAGTAGATGATCCTCAGCTTGTAGCATGGTCTGAATCTGTTGCAGAGCTATT 299
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 396 ATCAGTAGAAGTGGATGATCCTCAGCTTGTAGCATGGTCTGTCTCTGTTGCAGAGCTATT 455
Query 300 GGATTTGGATCCTAAAGAGTTTGAAAGGCCAGATTTCCCTCTCATGTTGTCCGGTGCTAA 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 456 AGATTTGGATCCTAAAGAATTTGAAAGGCCAGATTTCCCTCTCATGTTGTCCGGCGCTAA 515
Query 360 ACCTTTACCAGGAGCAATGCCTTATGCTCAATGCTATGGAGGACACCAGTTTGGCATGTG 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 516 ACCTTTACCAGGAGCAATGTCTTATGCTCAATGCTATGGAGGACACCAGTTTGGCATGTG 575
Query 420 GGCTGGACAACTAGGTGATGGACGTGCCATAACTCTGGGAGAAGTTTTGAACTCCAAAGG 479
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 576 GGCTGGACAACTAGGGGATGGACGTGCCATTACTCTGGGAGAAGTTTTGAACTCCAAAGG 635
Query 480 TGAAAGATGGGAACTTCAGCTTAAAGGTGCGGGTAGGACTCCATATAGCCGTTTTGCTGA 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 636 TGAAAGATGGGAACTTCAGCTTAAAGGTGCGGGTAGAACTCCATATAGCCGTTTTGCTGA 695
Query 540 TGGGCTTGCAGTGCTCCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAACTATGCATTG 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TGGCCTTGCAGTGCTCCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAACTATGCATTG 755
Query 600 TCTTGGAATCCCTACCACGCGCGCCCTTTGTCTTCTCACCACAGGTCAAGATGTCACTCG 659
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 756 TCTTGGGATCCCTACCACGCGTGCCCTTTGTCTTCTCACCACAGGTCAAAATGTCACTCG 815
Query 660 CGAC-------AT--TGGCAATCCGAAGGAAGAACCTGGCGCAATCGTTTGCAGGGTTTC 710
|||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 816 CGACATGTTTTATGATGGCAATCCGAAGGAAGAACCCGGCGCAATCGTTTGCAGGGTTTC 875
Query 711 TCAGTCATTTATCCGCTTTGGGTCATACCAAATACATGCTTCTAGAGGAAAAGAGGATCT 770
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 876 TCAGTCATTTCTACGCTTTGGGTCATACCAAATACATGCCTCTAGAGGAAAAGAGGATCT 935
Query 771 TGACATTGTTAGGAAGTTGGCAGACTATGCCATTAGACATCATTTCCCACATATAGAGAG 830
||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 936 TGATATTGTTCGTAAGTTGGCAGACTATGCCATTAAACATCATTTCCCACATATAGAGAG 995
Query 831 CATGGATCGAAGCGATAGCTTGTCTTTCAAAACCGGTGATGAAGATGATTCGGTTGTGGA 890
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 996 CATGGATAGAAGCGATAGCCTATCTTTCAAAACCGGTGATGAAGATGATTCGGTTGTGGA 1055
Query 891 TCTAACTTCCAACAAGTATGCAGCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TCTAACTTCCAACAAGTATGCAGCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTT 1115
Query 951 AGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 AGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAG 1175
Query 1011 CATTTTGGGTCAAACCATTGACTATGGCCCATTTGGGTTCTTGGATGCTTTTGATCCAAG 1070
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1176 CATTTTGGGTCAAACCATTGACTATGGCCCATTTGGTTTCTTGGATGCTTTTGATCCAAG 1235
Query 1071 TTACACCCCAAACACGACAGATCTCCCAGGAAGAAGATACTGTTTTGCAAATCAGCCTGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TTACACCCCAAACACGACAGATCTCCCAGGAAGAAGATACTGTTTTGCAAATCAGCCTGA 1295
Query 1131 CATCGGCTTGTGGAATATTGCTCAATTTTCTAAGACTCTGGCGGTTGCTCAGCTGATAAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1296 CATCGGCTTGTGGAATATTGCTCAATTTTCTAAGACTCTGGCGGTTGCTCAACTGATAAA 1355
Query 1191 TCAAAAGGAGGCGAATTACGCCATGGAAAGGTACGGTGATAAATTCATGGATGAGTATCA 1250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1356 TCAAAAGGAGGCGAATTACGCCATGGAGAGGTACGGTGATAAATTCATGGATGAGTATCA 1415
Query 1251 AGCCATAATGTCAAAGAAGCTTGGTCTTTCCAAGTATAACAAGGAGGTCATTAGTAAACT 1310
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1416 AGCCATAATGTCTAAGAAGCTTGGTCTTACCAAGTATAACAAGGAGGTCATTAGCAAACT 1475
Query 1311 TCTGAACAATATGTCTGTTGATAAAGTTGATTACACAAACTTCTTCCGGCTTCTTGCAAA 1370
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1476 TTTGAACAATATGTCTGTTGATAAAGTTGATTACACCAACTTCTTCCGGCTTCTTGCAAA 1535
Query 1371 TGTAAAAGCAAATCCCAACACACCTGAAAATGAGTTATTGAAACCCTTGAAAGCTGTGCT 1430
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1536 TGTAAAAGCAAATCCCAACACACCCGAAAATGAGTTATTGAAACCCTTGAAAGCTGTGCT 1595
Query 1431 CTTGGACATCGGAAAGGAGAGAAAAGAAGCATGGATCAAATGGATGCGAAGCTATATACA 1490
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1596 CTTGGACATCGGAAAGGAGAGAAAAGAAGCATGGATCAAATGGATGAGAAGCTATATACA 1655
Query 1491 AGAGGTGGGTGGTAGTGAGGTATCAGATGAAGAAAGAAAAGCAAGAATGGATTCGGTAAA 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1656 AGAGGTGGGTGGTAGTGAGGTATCAGATGAAGAAAGAAAAGCAAGAATGGATTCAGTGAA 1715
Query 1551 CCCAAAGTACATTCTGAGGAACTATCTGTGCCAAAGCGCAATAGATGCAGCTGAACAAGG 1610
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1716 CCCAAAGTACATTCTGAGGAACTATCTGTGCCAAAGTGCAATAGATGCAGCTGAACAAGG 1775
Query 1611 CGATTTCTCAGAAGTCAACAATTTGATCCGTCTAATGAAACGGCCTTATGAGGAACAGCC 1670
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1776 CGATTTCTCAGAAGTCAACAATTTGATCCGTCTAATGAAACGTCCTTATGAGGAACAGCC 1835
Query 1671 GGGTATGGAGAAATATGCTCGGTTGCCTCCAGCCTGGGCTTACAGGCCAGGCGTCTGCAT 1730
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1836 GGGGATGGAGAAATATGCTCGGTTGCCTCCTGCCTGGGCTTACAGGCCAGGCGTCTGCAT 1895
Query 1731 GCTTTCTTGTTCCTCCTAG 1749
|||||||||||||||||||
Sbjct 1896 GCTTTCTTGTTCCTCCTAG 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5