BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350509
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13600.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2828 0.0
> AT5G13600.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:4380432-4382497 FORWARD LENGTH=1776
Length=1776
Score = 2828 bits (1531), Expect = 0.0
Identities = 1695/1775 (95%), Gaps = 8/1775 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAGCTTGAAACTGGGTTCTAAATCTGAAGTGTTTCATCTAAGTGGTCACACATGG 60
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1 ATGGCTAGCTTGAAACTGGGTTCCAAATCTGAAGTCTTTCATCTTAGTGGTCACACATGG 60
Query 61 CTTTGCAAGACTGGTCTTAAACCCGATGTGATGATCCAAGTCGAAGACCAAAGCTTCCAT 120
|||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||
Sbjct 61 CTTTGCAAGACTGGTCTTAAGCCCGATGTTATGATCCAAGTCGTAGACGAAAGCTTCCAT 120
Query 121 CTCCATAAGTTTCCTTTGTTGTCAAGAAGTGGATATCTAGAAACTCTGTTTAGCAAAGCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CTCCATAAGTTTCCTTTGTTGTCAAGAAGTGGATATCTAGAAACTCTGTTCAGCAAAGCC 180
Query 181 TCTGAGACAACTTGTGTTGCTCAGCTTCATGACATTCCCGGTGGTCCTGAAACCTTCTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTGAGACAACTTGTGTTGCTCAGCTTCATGACATTCCCGGTGGTCCTGAAACATTCTTG 240
Query 241 CTTGTGGCTAAGTTCTGTTACGGTGTAAGAATTGAGGTCACACCTGAAAACG-TAGTGAG 299
||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 241 CTTGTAGCTAAGTTTTGTTACGGTGTAAGAATTGAGGTCACACCTGAAAACGCT-GTGAG 299
Query 300 TCTCAGATGTGCTGCAGAGTATCTCCAAATGAGTGAAAACTATGGAGATGCAAATCTCAT 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCAGATGTGCAGCAGAGTATCTCCAAATGAGTGAAAACTATGGAGATGCAAATCTCAT 359
Query 360 CTATCTCACTGAGTGTTTCCTCAACGATCACGTATTCGTAACCTGGGAAGATTCCATCAA 419
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CTATCTCACTGAGAGTTTCCTCAACGATCACGTATTCGTAAACTGGGAAGATTCCATCAA 419
Query 420 AGCCTTGGAGAAATCATGCGAACCAAAAGTGTTACCTCTCGCTGAAGAGCTTCACATTGT 479
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GGCCCTGGAGAAATCATGCGAACCAAAAGTGTTGCCTCTCGCTGAAGAGCTTCACATTGT 479
Query 480 TTCTAGGTGCATTGGTTCTTTAGCCATGAAGGCTTGTGCAGAGGACAACACAAGTTTTTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTAGGTGCATTGGTTCTTTAGCCATGAAGGCTTGTGCAGAGGACAACACAAGTTTTTT 539
Query 540 CAACTGGCCAATCTCACTACCAGAAGGAACCACTGCTACTACTACGTTTTGGAACGGAAT 599
||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||
Sbjct 540 CAACTGGCCAATCTCACTACCTGAAGGAACCACTACTACTACTATATATTGGAACGGAAT 599
Query 600 ACAAACAAAGGCCACGAGCGAAAACTGGTGGTTCAACGATGTATCATCGTTCCTAGATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACAAACAAAGGCCACGAGCGAAAACTGGTGGTTCAACGATGTATCATCGTTCCTAGATTT 659
Query 660 ACCAATGTACAAAAGGTTCATCAAAACCGTGGAATCCAGAGGCGTAAATGCGGGTATCAT 719
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 660 ACCAATGTACAAAAGGTTCATCAAAACTGTTGAATCCAGAGGCGTAAATGCGGGTATCAT 719
Query 720 AGCAGCATCTGTCACACACTACGCGAAACGGAATCTTCCTTTACTTGGTTGTTCTAGGAA 779
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 AGCAGCATCTGTCACACATTACGCCAAACGGAATCTTCCTTTACTTGGTTGTTCTAGGAA 779
Query 780 ATCTGGTTCTTCTTCAGAGGAAGGGACTAACTATGGAGATGACATGTACTATTCACATGA 839
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCTGGTTCTCCTTCAGAGGAAGGGACTAACTATGGAGATGACATGTACTATTCACATGA 839
Query 840 AGATCAACGAAGTCTCCTTGAGGACATCGTGGAACTACTCCCCGGAAAAAAGTGCGTTAC 899
||| |||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 840 AGAACAACGAAGTCTCCTTGAGGAAATCGTGGAACTTCTCCCGGGCAAAAAGTGCGTTAC 899
Query 900 A-CAGACAAAATTCTTGCTCAGGCTTCTAAGGACATCCATGGTTCTGCACGCGAGTCAGG 958
| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 900 ATC-GACAAAATTCTTGCTCAGGCTTCTTAGGACATCAATGGTTCTGCACGCGAGTCAGG 958
Query 959 TCACTCAGGAGACTCTGGAGAAGAGAATTGGTGTTCAGTTAGACGAAGCTGCTCTAGAGG 1018
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 959 TCACTCAGGAGACTCTGGAGAAGAGAATTGGAATGCAGCTAGACGAAGCTGCTCTAGAGG 1018
Query 1019 ATCTACTAATACCAAACATGAAATACTCAGGTGAAACACTCTATGATA-TCGACTCTGTC 1077
|| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1019 ATTTACTAATACCAAACATGAAATACTCAGGTGAAACACTCTATGATACT-GACTCTGTC 1077
Query 1078 CAGAGGATTCTTGATCACTTCATGTTGACGTTTGATTCAAGTATCGTTGAGGAGAAGCAA 1137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 CAGAGGATTCTTGATCACTTCATGTTGACGTTTGATTCAAGTATTGTTGAGGAGAAGCAA 1137
Query 1138 ATGATGGGAGATTCTCATCCTCTTAAGTCCATCACAAAGGTTGCTAGTCTGATAGACGGC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGATGGGAGATTCTCATCCTCTTAAGTCCATCACAAAGGTTGCTAGTCTGATAGACGGC 1197
Query 1198 TACTTAGCAGAGGTGGCATCTGATGAGAACTTGAAACTATCGAAATTTCAAGCACTCGGT 1257
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 TACTTAGCAGAGGTGGCGTCCGATGAGAACTTGAAACTATCGAAATTTCAAGCACTTGGT 1257
Query 1258 GCTCTAATCCAGGAAGATGTGAGGCCAATGGATGACGGTATCTACCGCGCAATAGATATT 1317
|||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1258 GCTCTAATCCCGGAAGACGTGAGACCAATGGATGACGGTATCTACCGTGCAATAGATATA 1317
Query 1318 TTCATCAAGGCTCATCCATGGCTAACAGAGTCAGAGAGAGAACAGTTGTGCCTGCTGATG 1377
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 TACATAAAGGCTCATCCATGGCTAACAGAGTCAGAGAGAGAACAGTTGTGCCTGCTTATG 1377
Query 1378 AACTGCCAGAAACTATCATTGGAGGCATGCACACACGCAGCACAAAACGAGCGTCTACCG 1437
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AATTGTCAGAAACTGTCATTGGAGGCATGCACACACGCAGCACAAAACGAGCGTCTACCA 1437
Query 1438 TTGCGGGTCATAGTACAAGTCCTGTTCTTTGAACAGATGCGGCTGAGGACATCTATAGCA 1497
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 TTGCGGGTCATAGTACAAGTCCTGTTCTTTGAACAGATGCGGCTTCGGACATCTATAGCA 1497
Query 1498 GGATGGTTATTCGGCTCGGAGGACAACAATGAC-CAAAGCGGCGCTTTAGAAGGACACAA 1556
||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| ||||
Sbjct 1498 GGATGGTTATTCGGCTCGGAGGAAAACAATGACACAA-GCGGCGCGTTAGAAGGAAACAA 1556
Query 1557 GAACAGAAACGCAAATATGGCGATGCATGGGATGAGAGAACGAGTGTACGAGCTTGAAAA 1616
||||| |||||||||||||| ||||||||||||||||||||| || | ||||||||||||
Sbjct 1557 GAACACAAACGCAAATATGGTGATGCATGGGATGAGAGAACGCGTATTCGAGCTTGAAAA 1616
Query 1617 AGAATGTATGAGCATGAAGCAAGATCTTGACAAGCTTGTCAAGACAAAAGAAGGACGCAA 1676
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1617 AGAATGTATGAGCATGAAGCAAGATCTTGATAAGCTTGTCAAGACAAAAGAAGGACGCAA 1676
Query 1677 CTTTTTCTCTAAGATATTCGGATCGAGATCAAAGACTAAGACTTCACCATGCGGCAAAGG 1736
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1677 CTTCTTCTCTAAGATATTCGGATCAAGATCTAAGACTAAGACTTCACCATGCGGTAAAGG 1736
Query 1737 AGGTGAGGACGCTCTAATGATTCCTGAAACCAAAA 1771
|||||||||||||||| ||||||||||||||||||
Sbjct 1737 AGGTGAGGACGCTCTAGTGATTCCTGAAACCAAAA 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87850953750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5