BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350516
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1773 0.0
> AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:4407077-4409011 REVERSE LENGTH=1318
Length=1318
Score = 1773 bits (960), Expect = 0.0
Identities = 1081/1141 (95%), Gaps = 2/1141 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTTGAGAGAGCAAGACCATTCATAGCCATTGTCTTCATACAGTGTTTGTACGCA 60
|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 57 ATGAAGTTTGAGAGAGCAAGGCCATTCATAGCCATTGTTTTCATACAATGTTTGTACGCT 116
Query 61 CTGATGTCTATAGTAGCAAAATTAGCTTTGAACGCGGGAATGAGCCCTCACGTCTTAGTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 117 TTGATGTCTATAGTAGCAAAATTAGCTTTGAACAAGGGAATGAGCCCTCACGTCTTAGTT 176
Query 121 GCTTACCGAATGGCAGTTGCTTCAGCTCTCATTACGCCTTTCGCCCTCGTCCTTGAGAGG 180
||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||
Sbjct 177 GCTTACCGAATGGCAGTTGCTTCCGCTCTCATTACGCCTTTCGCTCTCATCCTCGAGAGG 236
Query 181 AACTCAAGACCAAGGATGACCTTCAAGATTTTGTTACAAATAGCCATCCTTAGTTTATTT 240
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AACACAAGACCAAAGTTGACCTTCAAGATTTTGTTACAAATAGCCATCCTTAGTTTATTT 296
Query 241 GAGCCTGTGGTCGAACAAAACCTGTATTACTCAGGGATGAAACTTACCACTGCCACATTC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 GAGCCTGTGGTCGAACAAAACCTGTACTACTCAGGGATGAAACTTACCACTGCCACATTC 356
Query 301 ACATCAGCTTTGTGCAATGCACTTCCTGCTATGACATTCATTATGGCCTGCGTTTTCAAA 360
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 357 ACATCAGCTTTGTGCAATGCTCTTCCTGCTATGACATTCATAATGGCCTGCGTTTTCAAG 416
Query 361 CTCGAGAAGGTGACAATCGAAAGACGTCACAGCCAGGCAAAACTGGTGGGAACCGTGGTG 420
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 417 CTCGAGAAGGTGACAATCGAAAGACGCCACAGCCAGGCAAAGCTGGTGGGAACCATGGTG 476
Query 421 GCTATTGGAGGAGCAATGCTCATGACATTCGTGAAAGGGAATGTCATTGTGCTGCCTTGG 480
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 GCTATTGGGGGAGCAATGCTCATGACATTCGTGAAAGGGAATGTCATTGAGCTGCCTTGG 536
Query 481 ACAAGCAACTCAAGGGGCCTTGATGCGCATTCACATGCTATGATGATTCCAAAGCAGGAA 540
||||||||||||||||| ||| ||| ||| |||| ||||||| ||||||||||||||
Sbjct 537 ACAAGCAACTCAAGGGGTCTTAATGGGCACACACACGCTATGAGGATTCCAAAGCAGGCG 596
Query 541 GATATAGCAAGAGGATCAATTATGCTTGTAGCAAGCTGCTTCAGTTGGTCATGTTACATC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GATATAGCAAGAGGATCAATTATGCTTGTAGCAAGCTGCTTCAGTTGGTCATGTTACATC 656
Query 601 ATTTTACAGGCAAAGATTCTGGCTCAATATCAAGCTGAGCTCTCGCTAACAGCTCTTATG 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 ATTTTACAGGCAAAGATTCTGGCTCAATATAAAGCTGAGCTCTCGCTAACAGCTCTTATG 716
Query 661 TGCATTATGGGGATGTTGGAGGCTACTGTTATGGGACTGCTATGGGAAAGGAAAAACATG 720
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 717 TGCATTATGGGGATGTTGGAGGCTACTGTTATGGGATTGATATGGGAAAGGAAAAACATG 776
Query 721 TCGGTCTGGAAAATCAACCCGGACGTTACGCTTTTAGCTTCAATATACGGGGGACTTGTC 780
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||
Sbjct 777 TCGGTCTGGAAAATCAACCCGGACGTGACGCTTTTAGCTTCAATCTACGGAGGACTAGTC 836
Query 781 TCAGGGTTAGCATACTATGTTATTGGATGGGCGTCAAAGGAGAGAGGGCCTGTGTTTGTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCAGGGTTAGCATACTATGTTATTGGATGGGCGTCAAAGGAGAGAGGGCCTGTGTTTGTG 896
Query 841 AGCGCGTTTAACCCGCTCAGCATGGTTCTCGTTGCTATTCTGAGTACCTTTATTTTCATG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 897 AGCGCGTTTAACCCGCTCAGCATGGTTCTCGTTGCTATTCTGAGCACCTTTGTTTTCTTG 956
Query 901 GAAAAAATGTACCTAGGAAGGGTTGTTGGGTCAGTTGTCATTGTCATTGGTATATATTTG 960
|||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 957 GAAAAAGTGTACGTAGGAAGGGTTATTGGGTCAGTTGTCATTGTCATTGGGATATATTTG 1016
Query 961 GTACTATGGGGTAAAAGCAAGGACAAAGGAGGGAAGCTTCAACCAAACACCGGATGCGCA 1020
||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 1017 GTATTATGGGGTAAAAGCAAGGACAAAGGAGGGATGCTTCAACCAAACGCTGGATGCGCA 1076
Query 1021 GAGACTGTGGTAAAGATCGACCAACAGAAGGTTCCGACGCCTGATAATAACAAAGTAGTA 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 GAGACTGTGGTAAAGATTGACCAACAGAAGGTTCCGACGCCTGATAATAACCAAGTAGTA 1136
Query 1081 TCCACCAGTTACCAGTTAATGATCCCAAAGGTAGCAGCTCGATCTCAAGAGTCG-GTCTA 1139
|| | ||||||||| ||||||||||| |||| ||||||||| |||||||||| | |||||
Sbjct 1137 TCTATCAGTTACCATTTAATGATCCCGAAGGCAGCAGCTCGGTCTCAAGAGT-GAGTCTA 1195
Query 1140 A 1140
|
Sbjct 1196 A 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5