BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350576

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14290.1 | Symbols:  | Mitochondrial ribosomal protein L37 |...   394    3e-109


> AT5G14290.1 | Symbols:  | Mitochondrial ribosomal protein L37 
| chr5:4612097-4614401 REVERSE LENGTH=642
Length=642

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 272/301 (90%), Gaps = 2/301 (1%)
 Strand=Plus/Plus

Query  101  GAA-AAGG-TGGGAAGGGAGGTGGAGGTTATGAAGCACCAAAAGCATTGAGTTTGAGCAA  158
            ||| |||| ||||| ||||| ||||||| |||| ||||||||||||| ||  ||||||||
Sbjct  227  GAAGAAGGTTGGGAGGGGAGATGGAGGTAATGATGCACCAAAAGCATCGAACTTGAGCAA  286

Query  159  AGAGATCAAATCAAGTACGGTTGTTGGTGCTAATATTCTGAAAGGTGGATTGGACCCTAA  218
            |||||||||||| |||| ||||||| ||||||||| |||||||| |||||||||||||||
Sbjct  287  AGAGATCAAATCGAGTATGGTTGTTAGTGCTAATACTCTGAAAGATGGATTGGACCCTAA  346

Query  219  GATCTTGCCTGATTCAGATTACTCAGATTGTTTATGGCATTTGCTTGATAAGCGACCCGC  278
            |||||||||| |||||||| || | |||| |||||||||| |||||||||||||||| ||
Sbjct  347  GATCTTGCCTAATTCAGATCACCCTGATTATTTATGGCATCTGCTTGATAAGCGACCGGC  406

Query  279  GCTAAGTGGACTTAGAAGGAAGAATGTTGAGACTCTTCCTTTTGATGATCTTAAACGTTT  338
            ||| || | ||||||||||||||| ||||||||||||  |||||||||||||||||||||
Sbjct  407  GCTTAGCGAACTTAGAAGGAAGAACGTTGAGACTCTTAGTTTTGATGATCTTAAACGTTT  466

Query  339  TGTGAAGCTGGATACCAGAGCTAGAATCAAGGAGAACAATTCTATCAAGGCCAGGAACTG  398
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  467  TGTGAAGCTGGATACCAGAGCTAGAATCAAGGAGAACCATTCTATCAAGGCCAAGAACTG  526

Query  399  A  399
            |
Sbjct  527  A  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5