BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350640
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859127-486603... 300 8e-81
> AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859127-4866031
REVERSE LENGTH=4702
Length=4702
Score = 300 bits (162), Expect = 8e-81
Identities = 239/275 (87%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 116 GAGGAGGGATCATTGGGGACA-GGGGAGTTAACACTCAGAGATTGAGC-ACAGATGATGC 173
||||||||| |||||| || | ||||| | |||||||||| ||||| | || ||||||||
Sbjct 418 GAGGAGGGAGCATTGGTGA-AGGGGGAATCAACACTCAGAAATTGA-CTACCGATGATGC 475
Query 174 TTTGACCTACTTAATGGAAGTAAA-GAGGACGTTTCAAGATCAAAGGGACAAATATGATA 232
|||||||||||||| ||||||||| || || |||||||||||| | |||||||||||||
Sbjct 476 TTTGACCTACTTAAAGGAAGTAAAGGA-GATGTTTCAAGATCAGCGAGACAAATATGATA 534
Query 233 TGTTCCTTGAGGTTATGAACGACTTTAAAG-AGCAAAGGA-TCCATACTTCTGGTTTGAT 290
||||||||||||||||||| |||||||| | | |||| || | |||| |||||| ||||
Sbjct 535 TGTTCCTTGAGGTTATGAAAGACTTTAAGGCA-CAAAAGACTG-ATACATCTGGTGTGAT 592
Query 291 TGCACGAGTGAAGGAGCTACTTAAGGGTCATAACAATTTGATTCTCGGGTTTAATACCTT 350
| |||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||
Sbjct 593 TTCACGAGTGAAGGAGCTGTTTAAGGGGCATAACAATTTGATTTTCGGGTTTAACACCTT 652
Query 351 TTTGCCTAAGGGGTATGAAATAACTCTTGATAATG 385
|||||||||||||| ||||||||| |||||| |||
Sbjct 653 TTTGCCTAAGGGGTTTGAAATAACGCTTGATGATG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5