BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350641
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15030.2 | Symbols: | Paired amphipathic helix (PAH2) super... 213 8e-55
> AT5G15030.2 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr5:4866879-4869073 REVERSE LENGTH=1029
Length=1029
Score = 213 bits (115), Expect = 8e-55
Identities = 198/236 (84%), Gaps = 14/236 (6%)
Strand=Plus/Plus
Query 51 AGGGAAGACCACTAGTGATGCTCTGGCATACATTAAGCAAGTGAAAGATACG----TT-- 104
||||| ||||| ||||||||||| ||||||| || ||||||||||| ||||| ||
Sbjct 180 AGGGATGACCATTAGTGATGCTCGGGCATACCTTCAGCAAGTGAAAAATACGTTTATTGA 239
Query 105 TCGTGATCAAAGGGA-AAATTATGATATGTTCCGTATGCTTATGTTTAATTTTAAGGCTA 163
|| |||| ||||||| ||| |||| ||||||||||| | || |||| |||||||||| |
Sbjct 240 TCATGATGAAAGGGACAAA-TATGCTATGTTCCGTAAGGTTTTGTTCGATTTTAAGGC-A 297
Query 164 -AAAGGATTGATCAATCTACT-TTGTATGCTCGTTTGAAGAAGTTATTTAAGGAGCACAA 221
|| ||||||||| |||| | |||||||| || ||||||||||| |||||| |||||||
Sbjct 298 CAACGGATTGATCGTTCTA-TATTGTATGCACGATTGAAGAAGTTGTTTAAGAAGCACAA 356
Query 222 GA-ATTTAATTATCGGATTTAACACCTTTTTGTCACTTGGAGATAAGATAATTCTT 276
| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 357 -ACATTTGATTATCGGCTTTAACACCTTTTTGTCACTTGGAGATAAGATATTTCTT 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5