BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350644
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15060.1 | Symbols: | Lateral organ boundaries (LOB) domain... 324 1e-87
> AT5G15060.1 | Symbols: | Lateral organ boundaries (LOB) domain
family protein | chr5:4874332-4875949 REVERSE LENGTH=1171
Length=1171
Score = 324 bits (175), Expect = 1e-87
Identities = 408/514 (79%), Gaps = 42/514 (8%)
Strand=Plus/Plus
Query 9 GATGCGTAACAGACTCGTTTTCTTCTTGATTCT--CA-C--ATCAGTCATCATCTTGATG 63
||||| ||||| |||| |||||||||||||||| || | |||||||||||||||||||
Sbjct 87 GATGCCTAACAAACTCATTTTCTTCTTGATTCTCACATCAGATCAGTCATCATCTTGATG 146
Query 64 ACATCACAAGGCTCTTCCGGCGTAAATTACGGCGGTAACATCGAACC-ATGCGTCGCTTG 122
|||| ||||||||||||||||||||| |||||||| | || |||| ||||| ||||||
Sbjct 147 ACATTGCAAGGCTCTTCCGGCGTAAATAACGGCGGTTATGTC-AACCAATGCGCCGCTTG 205
Query 123 CAAGCACCAACGCCGTCGTTGCACACCGGACTGTATCTTTCGTC-TTCATTTTCCGGTGG 181
|| ||||||||||||||||||||||||||||||| ||||||||| || | ||||||| ||
Sbjct 206 CAGGCACCAACGCCGTCGTTGCACACCGGACTGTTTCTTTCGTCCTT-ACTTTCCGGCGG 264
Query 182 -GACGATATCAAGATTTCCAAAACGTTCACCGTC-A-ATTCGGCGTCCGCCGTGTGGTAG 238
| ||| ||||||| ||||||||| |||| |||| | |||| | | |||| | |
Sbjct 265 AG-CGACATCAAGAGTTCCAAAACTTTCATCGTCTACATTCCAA-TAC-CCGTCTCCAAA 321
Query 239 AAAATCTCGAA-AATTTGGC--G-C-C-GGAGGTACGAGGAGACGCAATGAAATCGATTA 292
|||| ||| || |||| || | | | ||||| || | |||| ||||||| ||||| |
Sbjct 322 AAAAGCTCAAAGAATTAGGATTGTCTCCGGAGGAACAAAGAGAAGCAATGAGCTCGATCA 381
Query 293 TATACGAATCCAACGTGCGCTCTCAATTCCCCG-----TCGATGGCTGTTACGGAGT-CA 346
|||||||||||||| | |||||||||||||||| ||| ||||||| ||| | | ||
Sbjct 382 TATACGAATCCAACATACGCTCTCAATTCCCCGGCCCGTCGGTGGCTGTCACGAA-TACA 440
Query 347 TTTTATATCTCCAAAACCAAATCGCACTCCTCAACGCTGAACTACTTCGCACCCGTTCTC 406
|||| |||| | || ||||||||||||| ||| ||||||||||| |||||||||| ||
Sbjct 441 TTTTCCATCTTCGAACCCAAATCGCACTCGTCACCGCTGAACTACGTCGCACCCGTGATC 500
Query 407 AACTCACCGCCGTCGTCGCCGCA-TCCAATCCAAGC-GCC-GCTTTCTTCAATCCCACCG 463
|| ||||||||| | | | || ||| | || || ||| |||| ||| ||| || |
Sbjct 501 AAATCACCGCCG-CTTT-CTTCAATCCCA-CC--GCCGCCAGCTT-CTTTAATTCC---G 551
Query 464 CCGCCAACAACTTCTTTCATCCCTC-TGCCGCCG 496
|||| ||||||||||| ||||||| | ||||||
Sbjct 552 CCGCTAACAACTTCTTAGATCCCTCCT-CCGCCG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5