BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350644 Length=987 Score E Sequences producing significant alignments: (Bits) Value AT5G15060.1 | Symbols: | Lateral organ boundaries (LOB) domain... 324 1e-87 > AT5G15060.1 | Symbols: | Lateral organ boundaries (LOB) domain family protein | chr5:4874332-4875949 REVERSE LENGTH=1171 Length=1171 Score = 324 bits (175), Expect = 1e-87 Identities = 408/514 (79%), Gaps = 42/514 (8%) Strand=Plus/Plus Query 9 GATGCGTAACAGACTCGTTTTCTTCTTGATTCT--CA-C--ATCAGTCATCATCTTGATG 63 ||||| ||||| |||| |||||||||||||||| || | ||||||||||||||||||| Sbjct 87 GATGCCTAACAAACTCATTTTCTTCTTGATTCTCACATCAGATCAGTCATCATCTTGATG 146 Query 64 ACATCACAAGGCTCTTCCGGCGTAAATTACGGCGGTAACATCGAACC-ATGCGTCGCTTG 122 |||| ||||||||||||||||||||| |||||||| | || |||| ||||| |||||| Sbjct 147 ACATTGCAAGGCTCTTCCGGCGTAAATAACGGCGGTTATGTC-AACCAATGCGCCGCTTG 205 Query 123 CAAGCACCAACGCCGTCGTTGCACACCGGACTGTATCTTTCGTC-TTCATTTTCCGGTGG 181 || ||||||||||||||||||||||||||||||| ||||||||| || | ||||||| || Sbjct 206 CAGGCACCAACGCCGTCGTTGCACACCGGACTGTTTCTTTCGTCCTT-ACTTTCCGGCGG 264 Query 182 -GACGATATCAAGATTTCCAAAACGTTCACCGTC-A-ATTCGGCGTCCGCCGTGTGGTAG 238 | ||| ||||||| ||||||||| |||| |||| | |||| | | |||| | | Sbjct 265 AG-CGACATCAAGAGTTCCAAAACTTTCATCGTCTACATTCCAA-TAC-CCGTCTCCAAA 321 Query 239 AAAATCTCGAA-AATTTGGC--G-C-C-GGAGGTACGAGGAGACGCAATGAAATCGATTA 292 |||| ||| || |||| || | | | ||||| || | |||| ||||||| ||||| | Sbjct 322 AAAAGCTCAAAGAATTAGGATTGTCTCCGGAGGAACAAAGAGAAGCAATGAGCTCGATCA 381 Query 293 TATACGAATCCAACGTGCGCTCTCAATTCCCCG-----TCGATGGCTGTTACGGAGT-CA 346 |||||||||||||| | |||||||||||||||| ||| ||||||| ||| | | || Sbjct 382 TATACGAATCCAACATACGCTCTCAATTCCCCGGCCCGTCGGTGGCTGTCACGAA-TACA 440 Query 347 TTTTATATCTCCAAAACCAAATCGCACTCCTCAACGCTGAACTACTTCGCACCCGTTCTC 406 |||| |||| | || ||||||||||||| ||| ||||||||||| |||||||||| || Sbjct 441 TTTTCCATCTTCGAACCCAAATCGCACTCGTCACCGCTGAACTACGTCGCACCCGTGATC 500 Query 407 AACTCACCGCCGTCGTCGCCGCA-TCCAATCCAAGC-GCC-GCTTTCTTCAATCCCACCG 463 || ||||||||| | | | || ||| | || || ||| |||| ||| ||| || | Sbjct 501 AAATCACCGCCG-CTTT-CTTCAATCCCA-CC--GCCGCCAGCTT-CTTTAATTCC---G 551 Query 464 CCGCCAACAACTTCTTTCATCCCTC-TGCCGCCG 496 |||| ||||||||||| ||||||| | |||||| Sbjct 552 CCGCTAACAACTTCTTAGATCCCTCCT-CCGCCG 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48325249414 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5