BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350793
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16800.3 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 989 0.0
AT3G02980.1 | Symbols: MCC1 | MEIOTIC CONTROL OF CROSSOVERS1 | ... 503 1e-141
> AT5G16800.3 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr5:5524282-5526589 REVERSE LENGTH=1343
Length=1343
Score = 989 bits (535), Expect = 0.0
Identities = 575/595 (97%), Gaps = 0/595 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCGTTTTCCCCGTGGATTCGTGGAGAATTCATCAATGGAGGAACCCAAAATCGCT 60
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGTCGCGTTTTCCCCGTGGATTTGTGGAGAATTCATCAATGGAGGAACCCAAAATCGCT 354
Query 61 CGTCGTCCAACTATCTGCTTCCGGCCAATAAACCCTTCTGATTTAGAACGTTTGGAGCAA 120
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 355 CGTCGTCCAACTATTTGCTTCAGACCAATAAACCCTTCTGATTTAGAACGTTTGGAGCAA 414
Query 121 ATCCATCGCGACATATTCCCAATTAGGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAAC 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 415 ATCCATCGTGACATATTCCCAATCAGGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAAC 474
Query 181 GGAGGTGATATCGTCTCTTGGGCTGCTATTGATCGGAGTCGCCCTGATGGTCATTCTGAG 240
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 GGAGGTGATATTGTCTCTTGGGCTGCTGTTGATCGGAGTCGCCCTGATGGTCATTCTGAG 534
Query 241 GAACTTATTGGATTTGTTACTGCCAAAATCGTGCTTGCCAAAGAAAGCGAAATATCAGAT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 GAACTTATTGGATTTGTTACTGCCAAAATCGTACTTGCCAAAGAAAGCGAAATATCAGAT 594
Query 301 CTAATAAGATATGACTCGTCGAAGGGAGAGGAGACATTGGTGTACATCCTAACACTTGGA 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 CTAATAAGATATGACTCGTCGAAGGGAGAGGGGACATTGGTGTACATCCTAACACTTGGA 654
Query 361 GTTGTAGAAACATACAGAAAACGTGGAATAGCTAAGTCGCTTATTAATGAGGTCGTGAAA 420
||||||||||||||||||||||||||||| |||||| | |||||||| |||||||| |||
Sbjct 655 GTTGTAGAAACATACAGAAAACGTGGAATCGCTAAGGCACTTATTAACGAGGTCGTCAAA 714
Query 421 TACACTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCATGTGATTGCACACAACAAT 480
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 TACTCTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCACGTGATTGCACACAACAAT 774
Query 481 CCCGCAATCCGGTTGTACAAAAGAATGTCTTTCAGATGTGTAAGGAGGTTACACGGATTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCCGCAATCCGGTTGTACAAAAGAATGTCTTTCAGATGTGTAAGGAGGTTACACGGATTC 834
Query 541 TACTTAATCAACGGACAGCATTTCGATTCCTACTTGTTCGTCTACTTTATCAACG 595
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 835 TACTTAATCAACGGCCAGCATTTCGATTCTTACTTGTTCGTCTACTTTATCAACG 889
Score = 370 bits (200), Expect = 1e-101
Identities = 218/227 (96%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 638 ATGGGGTTATCGTTGAATCATGGCTGCATTGCAGAGATCTTGCGGTGTTGGTTCTGAATT 697
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATGGGGTTATCGCTGAATCATGGCTGCATTGCAGAGATCTTGCGGTGTTGGTTCTGAATT 949
Query 698 ATATGAGGAGCGGAATCAAATCAGTCGCATCAAAGCTGACGATGAACCACGAAGAGAAAG 757
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 950 ATATGAGGAGCGGAATCAAATCTTTCGCATCAAAGCTGACGGTGAACCACGATGAGAAAG 1009
Query 758 GCTCGAAATGGCTTAAAAGCAAAGACAACACGCGATGTCTCTTGCCCACTCAGACCAAAC 817
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1010 GCTCGAAATGGCTTAAAAGCAAAGACAACACGCGGTGTCTCTTGCCCACTCAGACTAAAC 1069
Query 818 GAAACCTTGCATCTGAAAGAGTATCATCCGGGTACGATTACGTATAG 864
||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1070 GAAACCTTGCATCGGAAAGAGTATCATCCGGGTATGATTACGTATAG 1116
> AT3G02980.1 | Symbols: MCC1 | MEIOTIC CONTROL OF CROSSOVERS1
| chr3:670897-672215 REVERSE LENGTH=744
Length=744
Score = 503 bits (272), Expect = 1e-141
Identities = 514/630 (82%), Gaps = 20/630 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCGTTTTCCCCGTGGATTCGTGGA-GAATTCATCAATGGAGGAACCCA-AAATCG 58
||||| || ||||| || ||||| | || | ||||||||||||| | | || ||||
Sbjct 1 ATGTCGCGATTTCCTCGAAGATTCATAGATG-ATTCATCAATGGAAG-ATGCAGGAATCT 58
Query 59 CTCGTCGTCCAACTA-TCTGCT-TCCGGCCAATAAACCCTTCTGATTTAGAACGTTTGGA 116
||| | | |||| || || || | | || ||||||||| |||| |||| ||||||||
Sbjct 59 CTCTTTGCCCAAGTATTC-ACTAT-AGACCTATAAACCCTAATGATCTAGATCGTTTGGA 116
Query 117 GCAAATCCATCGCGACATATTCCCAATTAGGTATGAGTCTGAGTTTTTTCAGAATGTTGT 176
||||||||||||||| || ||||| || | |||||||||||||||||| |||| ||||||
Sbjct 117 GCAAATCCATCGCGATATCTTCCCCATCAAGTATGAGTCTGAGTTTTTCCAGAGTGTTGT 176
Query 177 CAACGGAGGTGATATCGTCTCTTGGGCTGCTATTGATCGGAGTCGCCCTGATGGTCATTC 236
||||||| |||||||||||| ||||||||| |||||||||| || ||||||| ||| ||
Sbjct 177 GAACGGAGTTGATATCGTCTCATGGGCTGCTGTTGATCGGAGCCGGCCTGATGATCACTC 236
Query 237 TGAGGAACTTATTGGATTTGTTACTGCCAAAATCGTGCTTGCCAAAGAAAGCGAAATATC 296
||| ||||||||||| ||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 237 TGATGAACTTATTGGTTTTGTTACTGCCAAATTTGTGCTTGCCAAAGATAGCGAGATA-G 295
Query 297 A-GATCTAATAAGA-TATGACTCGTCGAAGGGAGAGGAGACATTGGTGTACATCCTAACA 354
| ||||| || | | || || || ||||| ||||||||||| ||| | |||||| | |||
Sbjct 296 ATGATCTTAT-ACATTACGATTCCTCGAAAGGAGAGGAGACTTTGATATACATCTTGACA 354
Query 355 CTTGGAGTTGTAGAAACATACAGAAAACGTGGAATAGCTAA-GTCGCTTATTAATGAGGT 413
|| ||||||||||||||||||||||| |||||||| || || ||| ||||||| ||||||
Sbjct 355 CTCGGAGTTGTAGAAACATACAGAAACCGTGGAATCGC-AATGTCACTTATTAGTGAGGT 413
Query 414 CGTGAAATACACTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCATGTGATTGCACA 473
| ||||| |||| ||| | ||||||| || || |||||||||||||||||||||||
Sbjct 414 AATTAAATATGCTTCCGGTTTATCTGTGTGTCGCGGAGTTTACCTTCATGTGATTGCACA 473
Query 474 CAACAATCCCGCAATCCGGTTGTACAAAAGAATG-TCTTTCAGATGTGTAAGGAGGTTAC 532
||||||| | || ||| | |||||||||||| || | || |||||| || |||| ||||
Sbjct 474 CAACAATGCTGCGATCTGTTTGTACAAAAGATTGATGTT-CAGATGCGTGCGGAGATTAC 532
Query 533 ACGGATTCTA-CTTAATCAA-CGGACAGCATTTCGATTCCTACTTGTTCGTCTACTTTAT 590
| ||||| || || |||||| || ||| ||||| ||| | | |||||| |||||||| ||
Sbjct 533 ATGGATTTTATCT-AATCAATCG-ACATCATTTTGATGCGTTCTTGTTTGTCTACTTCAT 590
Query 591 CAACGGTTCTCGCTCTCCTTGCTCACCCTT 620
|||||||||||| ||||||||||||||||
Sbjct 591 CAACGGTTCTCGAACTCCTTGCTCACCCTT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5