BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350872
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17660.1 | Symbols: | tRNA (guanine-N-7) methyltransferase ... 1339 0.0
> AT5G17660.1 | Symbols: | tRNA (guanine-N-7) methyltransferase
| chr5:5818548-5820864 REVERSE LENGTH=1222
Length=1222
Score = 1339 bits (725), Expect = 0.0
Identities = 862/926 (93%), Gaps = 18/926 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGCTCTTTGTCAAGCTTGCTCTACATCTTCGA-CTAGACCATTGCTTCTGGCGAA 59
|||||| |||| ||||||||||||||| | ||||| | ||| ||||||||| ||||||||
Sbjct 54 ATGGCTTCTCTATGTCAAGCTTGCTCTTCGTCTTC-AGCTACACCATTGCTCCTGGCGAA 112
Query 60 AAGGGTGTTTTCCTTCA-CTTCGTCGCCGTATATCTTCACAAGCGG-ACATAAAATCTCT 117
||||||||| ||||| | | || || |||| |||||||| || || ||| |||||| ||
Sbjct 113 AAGGGTGTTCTCCTT-AGCATCATCTCCGTTTATCTTCATGAG-GGAACACAAAATCCCT 170
Query 118 CGCCATTGTAGCAGCTTCAGAGCA-TCCA--CC--TTC-GCG---TC-T--GCGTCTACC 165
|||||||||| |||||| |||||| | | || ||| ||| || | |||||||||
Sbjct 171 CGCCATTGTAACAGCTTTAGAGCATTTAATGCCGTTTCTGCGTCTTCGTCAGCGTCTACC 230
Query 166 TCAGTTTGTGTCGATTTAAAGGATCTGAGAAGCAATGAATTGGTGGACTTGGAGTATGCA 225
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 231 TCAGTTTGTGTCGATTTTAAGGATCTGAGAAGCAATGAATTGGTGGAATTGGAGTATGCA 290
Query 226 GAACTAAACCTCAATCATAAGATATCTGAAGAAGTGGGTCATGTAAGAATCAGACAGCAT 285
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAACTTAACCTCAATCATAAGATATCTGAAGAAGTGGGTCATGTAAGAATCAGACAGCAT 350
Query 286 GTTAATCCTCTCAGTTCGTCTTTCTCTAAACCAGCTCCAGTTCCTGTTTGGGATGAAGTT 345
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GTTAATCCTCTCAGTTCCTCTTTCTCTAAACCAGCTCCAGTTCCTGTTTGGGATGAAGTT 410
Query 346 TATAAGGATCCCTCACTTCCTCTTATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTC 405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TATAAGGATCCATCACTTCCTCTTATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTC 470
Query 406 CTATGGCTAGCCAATAAAAATGCTGAATCAAGAAATTACTTGGGGTTGGAAATACGTCAG 465
||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 471 CTATGGCAAGCCAATAAGAATGTTGAATCAAGAAATTACTTGGGGCTGGAAATACGTCAG 530
Query 466 AAACTGGTCAAGCGCGCCAACTTTTGGGTGAATGAGCTCGGACTTTCAAACGTACATTTC 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 531 AAACTGGTCAAGCGCGCCAACTTTTGGGTGAATGAGCTCGGACTTTCAAACGTACACTTC 590
Query 526 ATATTTGCAAACGCCATGGTTTCCTTTGAACAACTCATATCGAGTTATCCTGGACCACTG 585
||||||||||||||||||||||| |||||||| || |||||||| |||||||||||| ||
Sbjct 591 ATATTTGCAAACGCCATGGTTTCTTTTGAACATCTTATATCGAGCTATCCTGGACCATTG 650
Query 586 GAGATTGTCTCAATCTTGTGTCCGGATCCTCATTTCAAGAAACGTCATCAAAAGAGACGT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GAGATTGTCTCAATCTTGTGTCCGGATCCTCATTTCAAGAAACGTCATCAAAAGAGACGT 710
Query 646 GTTGTTCAAAAGCCTTTGGTGAATTCCATTCTTCAAAACCTAAAACCCGGCGGAAAAATC 705
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 GTTGTTCAAAAGCCTTTGGTGAATTCCATTCTTCAAAACCTAAAACCCGGTGGAAAAATA 770
Query 706 TTTGTGCAATCCGATGTGCTGGATGTGGCTCAAGACATGAGAGATCAGTTCGATGAGGAA 765
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 771 TTTGTGCAATCCGATGTGCTGGATGTGGCTCAAGACATGAGAGATCAGTTGGACGAGGAA 830
Query 766 TCAAGTGTTCTTCAACACATGGAAACAGTCGACACAGAAGATGGTTGGTTAATGGAAAAC 825
|||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||
Sbjct 831 TCAAATGTTCTTCAACACATGGACACAGTTGACACAGAGGATGGGTGGTTAACGGAAAAC 890
Query 826 CCGATGGGTATAAGAACAGAACGAGAGATCCACGCTGAATTCGAAGGTGCAAGAATCTAC 885
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 891 CCGATGGGTATAAGAACAGAACGAGAGATCCACGCAGAGTTCGAAGGTGCAAGAATCTAC 950
Query 886 AGAAGACTTTACCAGAAACGTCAGCT 911
||||||||||||||||||||||||||
Sbjct 951 AGAAGACTTTACCAGAAACGTCAGCT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5