BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350882

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17730.1 | Symbols:  | P-loop containing nucleoside triphosp...   784    0.0  


> AT5G17730.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:5852498-5853999 
REVERSE LENGTH=1413
Length=1413

 Score =  784 bits (424),  Expect = 0.0
 Identities = 499/536 (93%), Gaps = 2/536 (0%)
 Strand=Plus/Plus

Query  1    ATGTTTTCTCTTAGAAATCTTCCTTCCCTTGCACCATTTGTCTCAGCCTACGCATCATTG  60
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  1    ATGTTTTCTCTTAGAAATCTTCCTTCGCTTGCACCGTTTGTCTCAGCCTACGCATCATTG  60

Query  61   ACGGGATACATCATGATGATCAAACCATTTATTGAGATGACAATTCCACCTCCGTTACAA  120
            ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  61   ACGGGATACGTCATGATGATCAAACCATTTCTTGAGATGACAATTCCACCTCCGTTACAA  120

Query  121  AACTACATCATCTCTTATCTCAATTCTTTCTTGCACTCTAGTCCATCGACTCTCACGCTC  180
            |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  121  AACTACATGATCTCTTATCTCAATTCTTTCTTGCACTCTACTCCATCGACTCTCACGCTC  180

Query  181  ATCATCGACGACCAGATCAAGAATGGGATGAACAACGAGCTCTATGGGGCTGCTCAGGTT  240
            |||||||| ||||| ||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct  181  ATCATCGATGACCATATCAAGAATGGGATGTATAACGAGCTCTACGGGGCTGCTCAGGTT  240

Query  241  TATATCTCCACCAAGATCAACTGCAACGCGGCAAGGCTTAGGATCTTTAGAGACCGCAGT  300
            ||||| || |||||| |||||  |||||||| |||||| ||||||| |||||||||||||
Sbjct  241  TATATTTCTACCAAGGTCAACCACAACGCGGAAAGGCTAAGGATCTCTAGAGACCGCAGT  300

Query  301  GAGAAAAACGTCAATTTACACCTCAGCGTAGGAGAGGTTGTCTCGGATGTCTACCAAGGC  360
            ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  301  GAGAAAAACGTCAATATACACTTCAGCGTAGGAGAGGTTGTCTCGGATATCTACCAAGGC  360

Query  361  ATTGAGCTCAAGTGGCGTTTTTGTGTTGAAAGCAAGAAGACCAATATGGTTCATGATTTT  420
            |||||| |||||||||| ||||||||||| ||||| |||| ||||||||||||| |||||
Sbjct  361  ATTGAGGTCAAGTGGCGGTTTTGTGTTGACAGCAATAAGAGCAATATGGTTCATTATTTT  420

Query  421  GGGGAACATTTTAAGCTAAACTCCGATCGGGAGTAT-TTCGAGCTTAGCTTTGAAAACAA  479
            ||||||||||||||||||||| ||||||||||||   || ||||||||||||||||| ||
Sbjct  421  GGGGAACATTTTAAGCTAAACCCCGATCGGGAGTGCGTT-GAGCTTAGCTTTGAAAAGAA  479

Query  480  ACACAGAGACTTGGTCTTGAATTCTTATATACCTTACGTGGAAAGCAAGGCAAAGG  535
            ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  480  ACACACAGAGTTGGTCTTGAATTCTTATATACCTTACGTGGAGAGCAAGGCAAAGG  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5