BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg350885

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17760.1 | Symbols:  | P-loop containing nucleoside triphosp...   857    0.0  


> AT5G17760.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:5860421-5862422 
REVERSE LENGTH=1809
Length=1809

 Score =  857 bits (464),  Expect = 0.0
 Identities = 525/555 (95%), Gaps = 2/555 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGGTTACATGATGATGATACGATCAATGGCTCACGAGCTAATCCCAGCTCCGATC  60
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||
Sbjct  179  ATGGCGGGTTACATGATGATGATAAGATCAATGGCTCACGAGCTAATCCCAGCTCCCCTC  238

Query  61   CAAGATTTCATCTACAGGACTCTCCGGTCTCTCTTCTTCCGTGCTTCTTCCTCCACTTTG  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  239  CAAGATTTCATCTACAGGACTCTCCGGTCTCTCTTCTTCCGTTCTTCTTCCTCCACTTTG  298

Query  121  ACTCTAACCATCGACGACGACAACATGGGCATGAACAACGAGATCTACCGAGCTGCTCAG  180
            || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  299  ACGCTAACCATCGATGACGACAACATGGGTATGAACAACGAGATCTACCGAGCTGCTCAG  358

Query  181  ACTTATCTCTCCACCAAGATCAGTCCTGACGCAGTCAGGCTCAGAATCAGTAAAGGTCAC  240
            ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || 
Sbjct  359  ACTTATCTCTCCACCAAGATCAGTCCTGATGCAGTCAGGCTCAGAATAAGTAAAGGCCAT  418

Query  241  AAGGATAAACATGTCAATCT-GTATCTCAGCGACGGAGAAATCGTCAACGATGTGTACGA  299
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  419  AAGGATAAACATGTCAA-CTTGTATCTCAGCGACGGAGAAATCGTCAACGATGTGTACGA  477

Query  300  AGATGTCCAGCTAGTATGGAGGTTTGTTACAGACGGTGGAGACAAGAAAAGCGGTGGCgg  359
            |||||| ||||||||||||||||||||||| |||||||||||||||||| | || |||||
Sbjct  478  AGATGTGCAGCTAGTATGGAGGTTTGTTACTGACGGTGGAGACAAGAAAGGAGGCGGCGG  537

Query  360  aggagtaggaggaagaggaggaggaggaggaagaagaggCGGTATGGACGATGACGGTAG  419
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  538  AGGAGTAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGTGGTATGGACGATGACGGTAA  597

Query  420  AAGCGAGTATTTCGAGCTGAGTTTCGACAAGAAGCATAAAGATTTGATCTTGAGCTCATA  479
            ||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||| ||
Sbjct  598  AAGCGAGTACTTCGAGCTGAGTTTCGACAAGAAACATAAAGATTTGATATTGAACTCTTA  657

Query  480  CATTCCTTACATCGAGAGTAAAGCTAAAGAGATTAGAGACGAGAGGAGAATCTTGATGCT  539
              | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  658  TGTGCCTTACATCGAGAGTAAAGCTAAAGAGATAAGAGACGAGAGAAGAATCTTGATGCT  717

Query  540  GCATTCTCTCAACAG  554
            |||||||||||||||
Sbjct  718  GCATTCTCTCAACAG  732



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5