BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350906
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5959900-5961642 RE... 1375 0.0
AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor fa... 503 1e-141
> AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5959900-5961642
REVERSE LENGTH=1264
Length=1264
Score = 1375 bits (744), Expect = 0.0
Identities = 856/910 (94%), Gaps = 8/910 (1%)
Strand=Plus/Plus
Query 19 TTTGGTCAGGTTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 78
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TTTGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 250
Query 79 GATTTTTCGTCTGAAATGATGAGAATGATTCCGCATCACTTGATAAGAAGCATCTCCGAC 138
||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 251 GATCATTCGACTGAAATGATGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGAC 310
Query 139 AAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGGCAAGTTAAA 198
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 311 AAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAAA 370
Query 199 ATCTCCAAGAACCCAATTTTTCACTACATGGAAGATCGTGGTTGGAACCAGTTTGTGAAT 258
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 371 ATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAAT 430
Query 259 GACAACGGCTTGGGTTTAAACGAGTTTCTTACTTTCACTCATGAGGCAAATATGTGCTTT 318
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 GACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACTCATGAGGCAAATATGTGCTTT 490
Query 319 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGACAACCTTCAACC 378
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 491 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGA-AA-----AACC 544
Query 379 ATTGCTTCTAGTTCCGGTCGGAACaagagagaagagaagaagagcatctacatagatgtg 438
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 545 ATTACTTCTAGTTCCGGTCGGAACAAGAGAGAAGAGAGGAAGAGCATCTACAAAGATGTG 604
Query 439 aagaaggaagaagagatagagTCTTGGTCTGAATCGAGCTATGCTGGTCATAAAACAGCT 498
||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||
Sbjct 605 AAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCT 664
Query 499 GAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTGagaaagaaggaagcc 558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 GAATCTACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 724
Query 559 gataaaaccgaaaaatccaagaagaggaagaagaagaagGTGGATACTGTTTGTAACGAT 618
|||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||
Sbjct 725 GATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAAACTGTTAGTAACGAC 784
Query 619 TCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 678
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 785 TCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 844
Query 679 CT-CTTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATATGCCAAGTGAGACAAA 737
|| || ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 845 CTTCT-GTTCTTGGGGATCCCAAAGAAATTTGTGGATATGCATATGCCAACTGAGACAAC 903
Query 738 GATGTTCAAGATTCATCATCCGAGAGGAAAGAAGTCATGGGAGGTTTGGTATGTGGTCAA 797
|||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 904 GATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCAC 963
Query 798 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAAGAGTTAGGTTTAGT 857
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 964 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACT 1023
Query 858 GGTCGGAGATGTTTGCACGTTTGAGCTCATCAAACCGACCGAGATGTGTGTCAAAGTCTC 917
||||||||||||||| ||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 1024 GGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATGCGTGTGAAAGTCTC 1083
Query 918 CAAAGAATAG 927
||||||||||
Sbjct 1084 CAAAGAATAG 1093
> AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:5985365-5987165 FORWARD LENGTH=1248
Length=1248
Score = 503 bits (272), Expect = 1e-141
Identities = 720/928 (78%), Gaps = 63/928 (7%)
Strand=Plus/Plus
Query 18 GTTTGGTCAGGTTATGGAAGAAAG-AGATAATCCAGCATTCTTCAAGATTCTTCGAAGGG 76
|||||||||| ||||||| | | | ||| ||||| | ||||||||||| |||||||| |
Sbjct 117 GTTTGGTCAGATTATGGATG-ATGCAGAGAATCCCGGGTTCTTCAAGATCCTTCGAAGTG 175
Query 77 AAGATTTTTCGTCTGAAATGATGAGAATGATTCCGCAT-CACTTGAT-AAGAAGCATCTC 134
|||||| ||||||||||| |||||| ||| || | | |||| || || |||||||||
Sbjct 176 CAGATTTATCGTCTGAAATCATGAGAGGGATCCCTC-TAAACTTCATCAA-AAGCATCTC 233
Query 135 CG-ACAAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGG-CAA 192
| | ||| || ||| ||||||| | |||| ||| |||||||||| || ||| | |
Sbjct 234 GGAAGAAGAGTT-ATCGGCTAAGATGTTGTTAAAAGTGTCATGGGGAAGTTCTTGGCCTA 292
Query 193 GTTAAAATCTCCAAG-AACCCAATTTTTC-ACTACATGGA-AGATCGTGGTTGGAACCAG 249
| ||||| | || ||||||| ||| ||| ||||| | | | || ||| | |||
Sbjct 293 -TCAAAAT-TTGTAGAAACCCAA-GCTTCTACTTTATGGAGAAAAAG-GGATGGGATCAG 348
Query 250 TTTGTGAATGACAACGGCTTGGGTTTAA--ACGAGTTTCTTACTTTCACTCA-TGAGGCA 306
||| ||| ||||| || || || ||| | ||||||||||| ||||| || ||| |
Sbjct 349 TTTTTGAGCGACAATGGATTAGG--TAATGATGAGTTTCTTACCTTCACACACCAAGG-A 405
Query 307 AATATGTGCTTTAATGT-AACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAG 365
||||||||||||| || | ||| | | | ||| |||| ||| | |||| |||| |
Sbjct 406 AATATGTGCTTTACCGTGGA-CATCTACCAAATAGACGGTAAAGAGCTACTTACACCACG 464
Query 366 ACA-ACCTTCAACCATTGCTTCTAGTTCCGGTCGGAACaagagagaagagaag-aagagc 423
|| | || |||||||||||||||||||||||||||||||||||||| | ||| || | |
Sbjct 465 -CAGATCTGCAACCATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAACA-AAGGAATAAC 522
Query 424 atctacatagatgtgaagaaggaagaagagatagagTCTTGGTCTGAATCGAGCTATGCT 483
||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 523 ATCTACAAAGATGTGAAGGAGGAAGAAGACATAGAGTCTTGGTCTGAATCGAGCTATCCT 582
Query 484 GGTCATAAAACAGCTGAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTG 543
||||| |||||||||||||||||| | | | | |||| | ||| || |||| ||||
Sbjct 583 GGTCACAAAACAGCTGAATCTACA-G-G--A-A--GAAG-ACAAA--GG--CTTAGCTTG 630
Query 544 agaaagaaggaagccgataaaaccgaaaaatccaagaagaggaagaagaagaagGTGGAT 603
|| || ||| ||||| | |||| || ||||| ||||||| | ||||| |||||||||
Sbjct 631 AGTAATAAGAAAGCCAAGGAAACTGAGAAATCAAAGAAGA--A-GAAGATGAAGGTGGAA 687
Query 604 ACTGTTTGTAACGATTCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACC 663
| | || || |||||||| ||| | || || ||||||||||||||||| | ||||||
Sbjct 688 AGTATTAGTTACGATTCTCAAGATGACAGTTTGTCTCTTGTTCCAGAATTTACCCTCACC 747
Query 664 ATAAAGAAATCACACCTC-TTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATAT 722
|||||||||||| ||||| || ||||||||||| || |||| ||||| ||| |||||||
Sbjct 748 ATAAAGAAATCATACCTCATT-TTCTTGGGGATTCCAAAGATGTTTGAGGAGCTGCATAT 806
Query 723 GCCAA-GTGAGACAAAGATGTTCAAGATTCATCATCCGAGA-GGAAAGAAG-TCATGGGA 779
||||| | ||| ||| ||||||||||| ||| ||||| || || || ||| ||||||||
Sbjct 807 GCCAACG-GAGGCAACTATGTTCAAGATCCATGATCCG-GAAGGGAA-AAGGTCATGGGA 863
Query 780 GGTT-TGGTATGTGGTCAATGATGTAC-A-ATCAAGATTCTCTGGTGGATGGAGTCGTTT 836
||| || ||| | ||| | || || | | ||||||||| || ||| |||| ||||||
Sbjct 864 TGTTATG-TATAAGTTCAGTAATA-ACCAGA-CAAGATTCTGTGCTGGTTGGATTCGTTT 920
Query 837 GGCCAAAGAG-TTAGGTTTAGTGGTCGGAGATGTTTGCACGTTTGA-GCTCATCAAACCG 894
||| ||||| || ||||| | | |||||||||||||||| ||| | ||||||||||||
Sbjct 921 GGCTAAAGAACTT-GGTTTGGAGATCGGAGATGTTTGCAC-TTTCACGCTCATCAAACCT 978
Query 895 ACCGAGATG-TGTGTCAAAGTCTCCAAA 921
||||||||| | ||| | |||||| |||
Sbjct 979 ACCGAGATGCT-TGTTAGAGTCTCTAAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5