BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350906 Length=927 Score E Sequences producing significant alignments: (Bits) Value AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5959900-5961642 RE... 1375 0.0 AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor fa... 503 1e-141 > AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5959900-5961642 REVERSE LENGTH=1264 Length=1264 Score = 1375 bits (744), Expect = 0.0 Identities = 856/910 (94%), Gaps = 8/910 (1%) Strand=Plus/Plus Query 19 TTTGGTCAGGTTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 78 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 TTTGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 250 Query 79 GATTTTTCGTCTGAAATGATGAGAATGATTCCGCATCACTTGATAAGAAGCATCTCCGAC 138 ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 251 GATCATTCGACTGAAATGATGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGAC 310 Query 139 AAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGGCAAGTTAAA 198 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 311 AAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAAA 370 Query 199 ATCTCCAAGAACCCAATTTTTCACTACATGGAAGATCGTGGTTGGAACCAGTTTGTGAAT 258 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 371 ATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAAT 430 Query 259 GACAACGGCTTGGGTTTAAACGAGTTTCTTACTTTCACTCATGAGGCAAATATGTGCTTT 318 |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 431 GACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACTCATGAGGCAAATATGTGCTTT 490 Query 319 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGACAACCTTCAACC 378 |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 491 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGA-AA-----AACC 544 Query 379 ATTGCTTCTAGTTCCGGTCGGAACaagagagaagagaagaagagcatctacatagatgtg 438 ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 545 ATTACTTCTAGTTCCGGTCGGAACAAGAGAGAAGAGAGGAAGAGCATCTACAAAGATGTG 604 Query 439 aagaaggaagaagagatagagTCTTGGTCTGAATCGAGCTATGCTGGTCATAAAACAGCT 498 ||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||| Sbjct 605 AAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCT 664 Query 499 GAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTGagaaagaaggaagcc 558 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 665 GAATCTACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 724 Query 559 gataaaaccgaaaaatccaagaagaggaagaagaagaagGTGGATACTGTTTGTAACGAT 618 |||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||| Sbjct 725 GATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAAACTGTTAGTAACGAC 784 Query 619 TCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 678 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 785 TCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 844 Query 679 CT-CTTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATATGCCAAGTGAGACAAA 737 || || ||||||||||||||| ||||| |||||||||||||||||||||| |||||||| Sbjct 845 CTTCT-GTTCTTGGGGATCCCAAAGAAATTTGTGGATATGCATATGCCAACTGAGACAAC 903 Query 738 GATGTTCAAGATTCATCATCCGAGAGGAAAGAAGTCATGGGAGGTTTGGTATGTGGTCAA 797 |||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| Sbjct 904 GATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCAC 963 Query 798 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAAGAGTTAGGTTTAGT 857 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 964 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACT 1023 Query 858 GGTCGGAGATGTTTGCACGTTTGAGCTCATCAAACCGACCGAGATGTGTGTCAAAGTCTC 917 ||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||| Sbjct 1024 GGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATGCGTGTGAAAGTCTC 1083 Query 918 CAAAGAATAG 927 |||||||||| Sbjct 1084 CAAAGAATAG 1093 > AT5G18090.1 | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:5985365-5987165 FORWARD LENGTH=1248 Length=1248 Score = 503 bits (272), Expect = 1e-141 Identities = 720/928 (78%), Gaps = 63/928 (7%) Strand=Plus/Plus Query 18 GTTTGGTCAGGTTATGGAAGAAAG-AGATAATCCAGCATTCTTCAAGATTCTTCGAAGGG 76 |||||||||| ||||||| | | | ||| ||||| | ||||||||||| |||||||| | Sbjct 117 GTTTGGTCAGATTATGGATG-ATGCAGAGAATCCCGGGTTCTTCAAGATCCTTCGAAGTG 175 Query 77 AAGATTTTTCGTCTGAAATGATGAGAATGATTCCGCAT-CACTTGAT-AAGAAGCATCTC 134 |||||| ||||||||||| |||||| ||| || | | |||| || || ||||||||| Sbjct 176 CAGATTTATCGTCTGAAATCATGAGAGGGATCCCTC-TAAACTTCATCAA-AAGCATCTC 233 Query 135 CG-ACAAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGG-CAA 192 | | ||| || ||| ||||||| | |||| ||| |||||||||| || ||| | | Sbjct 234 GGAAGAAGAGTT-ATCGGCTAAGATGTTGTTAAAAGTGTCATGGGGAAGTTCTTGGCCTA 292 Query 193 GTTAAAATCTCCAAG-AACCCAATTTTTC-ACTACATGGA-AGATCGTGGTTGGAACCAG 249 | ||||| | || ||||||| ||| ||| ||||| | | | || ||| | ||| Sbjct 293 -TCAAAAT-TTGTAGAAACCCAA-GCTTCTACTTTATGGAGAAAAAG-GGATGGGATCAG 348 Query 250 TTTGTGAATGACAACGGCTTGGGTTTAA--ACGAGTTTCTTACTTTCACTCA-TGAGGCA 306 ||| ||| ||||| || || || ||| | ||||||||||| ||||| || ||| | Sbjct 349 TTTTTGAGCGACAATGGATTAGG--TAATGATGAGTTTCTTACCTTCACACACCAAGG-A 405 Query 307 AATATGTGCTTTAATGT-AACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAG 365 ||||||||||||| || | ||| | | | ||| |||| ||| | |||| |||| | Sbjct 406 AATATGTGCTTTACCGTGGA-CATCTACCAAATAGACGGTAAAGAGCTACTTACACCACG 464 Query 366 ACA-ACCTTCAACCATTGCTTCTAGTTCCGGTCGGAACaagagagaagagaag-aagagc 423 || | || |||||||||||||||||||||||||||||||||||||| | ||| || | | Sbjct 465 -CAGATCTGCAACCATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAACA-AAGGAATAAC 522 Query 424 atctacatagatgtgaagaaggaagaagagatagagTCTTGGTCTGAATCGAGCTATGCT 483 ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| || Sbjct 523 ATCTACAAAGATGTGAAGGAGGAAGAAGACATAGAGTCTTGGTCTGAATCGAGCTATCCT 582 Query 484 GGTCATAAAACAGCTGAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTG 543 ||||| |||||||||||||||||| | | | | |||| | ||| || |||| |||| Sbjct 583 GGTCACAAAACAGCTGAATCTACA-G-G--A-A--GAAG-ACAAA--GG--CTTAGCTTG 630 Query 544 agaaagaaggaagccgataaaaccgaaaaatccaagaagaggaagaagaagaagGTGGAT 603 || || ||| ||||| | |||| || ||||| ||||||| | ||||| ||||||||| Sbjct 631 AGTAATAAGAAAGCCAAGGAAACTGAGAAATCAAAGAAGA--A-GAAGATGAAGGTGGAA 687 Query 604 ACTGTTTGTAACGATTCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACC 663 | | || || |||||||| ||| | || || ||||||||||||||||| | |||||| Sbjct 688 AGTATTAGTTACGATTCTCAAGATGACAGTTTGTCTCTTGTTCCAGAATTTACCCTCACC 747 Query 664 ATAAAGAAATCACACCTC-TTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATAT 722 |||||||||||| ||||| || ||||||||||| || |||| ||||| ||| ||||||| Sbjct 748 ATAAAGAAATCATACCTCATT-TTCTTGGGGATTCCAAAGATGTTTGAGGAGCTGCATAT 806 Query 723 GCCAA-GTGAGACAAAGATGTTCAAGATTCATCATCCGAGA-GGAAAGAAG-TCATGGGA 779 ||||| | ||| ||| ||||||||||| ||| ||||| || || || ||| |||||||| Sbjct 807 GCCAACG-GAGGCAACTATGTTCAAGATCCATGATCCG-GAAGGGAA-AAGGTCATGGGA 863 Query 780 GGTT-TGGTATGTGGTCAATGATGTAC-A-ATCAAGATTCTCTGGTGGATGGAGTCGTTT 836 ||| || ||| | ||| | || || | | ||||||||| || ||| |||| |||||| Sbjct 864 TGTTATG-TATAAGTTCAGTAATA-ACCAGA-CAAGATTCTGTGCTGGTTGGATTCGTTT 920 Query 837 GGCCAAAGAG-TTAGGTTTAGTGGTCGGAGATGTTTGCACGTTTGA-GCTCATCAAACCG 894 ||| ||||| || ||||| | | |||||||||||||||| ||| | |||||||||||| Sbjct 921 GGCTAAAGAACTT-GGTTTGGAGATCGGAGATGTTTGCAC-TTTCACGCTCATCAAACCT 978 Query 895 ACCGAGATG-TGTGTCAAAGTCTCCAAA 921 ||||||||| | ||| | |||||| ||| Sbjct 979 ACCGAGATGCT-TGTTAGAGTCTCTAAA 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45311200594 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5