BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350922
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18180.1 | Symbols: | H/ACA ribonucleoprotein complex, subu... 643 0.0
> AT5G18180.1 | Symbols: | H/ACA ribonucleoprotein complex, subunit
Gar1/Naf1 protein | chr5:6008561-6009605 REVERSE LENGTH=570
Length=570
Score = 643 bits (348), Expect = 0.0
Identities = 436/475 (92%), Gaps = 19/475 (4%)
Strand=Plus/Plus
Query 1 ATGAGACCACCACGTGGCGGCGGGAGTTTCAGGGGAAGGGGAGGAAGAGAT---GGCGG- 56
||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 1 ATGAGACCACCACGTGGCGGCGGCAGCTTCAGGGGAAGGGGAGGAAGAGATAACGGCGGA 60
Query 57 C--AGACGCGGA-TTTG--GTGG-CGGTGGACGC---GGTCGT--T--TTGGTGACGAAG 103
| |||| ||| | | |||| | |||||||| ||| || | || ||||||||
Sbjct 61 CGTGGACGTGGACGTGGACGTGGAC-GTGGACGCTTTGGTGGTGGTAATT-ATGACGAAG 118
Query 104 GACCTCCCAGCGAAGTCGTTGAGGTTGCAACCTTTCTCCATGCTTGTGAGGGAGATGCTG 163
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 119 GACCTCCCAGCGAAGTCGTTGAAGTTGCAACTTTTCTCCATGCTTGTGAGGGAGATGCTG 178
Query 164 TGTTCAAGCTCTCCAATGTGAAAATCCCACATTTCAATGCCCCAATCTACCTACAAAACA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTTCAAGCTCTCCAATGTGAAAATCCCACATTTCAATGCCCCAATCTACCTACAAAACA 238
Query 224 AGACCCAGATTGGGAGAGTAGATGAAATCTTTGGTCCGATTAACGAATCTCTGTTTTCTA 283
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 239 AGACCCAGATTGGGAGAGTAGATGAAATCTTTGGTCCTATTAATGAATCTCTATTTTCTA 298
Query 284 TCAAAATGAGGGAAGGTATTGTAGCAACCTCGTATACTCAAGGCGATAAGTTCTTCATTA 343
||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 299 TCAAAATGAGGGAAGGTATTGTAGCTACCTCATATAGTCAAGGCGATAAGTTCTTCATTA 358
Query 344 ACCCTGAGAAGCTTTTACCTCTATCAAGATTCCTTCCTCAACCAAAGGGGCAATCAGCAG 403
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 359 GCCCTGAGAAGCTTTTACCTCTATCAAGATTCCTTCCTCAACCAAAGGGACAATCAGGAG 418
Query 404 GCCGTGGTGGAGGAAGAGTCCCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGG 458
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCCGTGGTGAAGGAAGAGTCCCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGG 473
Score = 217 bits (117), Expect = 1e-55
Identities = 127/132 (96%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 460 CCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGGCAATTTCAGAGGTAGAGGTGCTCCC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGGCAATTTCAGAGGTAGAGGTGCTCCC 498
Query 520 AGAAGTGTTAGCAGAGGGTTTCATCAAAGAGGTGGTCCTCGTGGAGGCTTCAGAGGCCGA 579
||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 499 AGAGGTGCTAGCAGAGGGTTTCAACCAAGAGGTGGTCCTCGTGGAGGCTTCAGAGGCCGA 558
Query 580 GGGAGAGCCTAG 591
||||| ||||||
Sbjct 559 GGGAGGGCCTAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5