BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350938
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5... 1504 0.0
AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5... 887 0.0
AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5... 697 0.0
AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing... 394 1e-108
> AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5:6068474-6070042
REVERSE LENGTH=1338
Length=1338
Score = 1504 bits (814), Expect = 0.0
Identities = 1150/1309 (88%), Gaps = 35/1309 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGACGGCGGACGAGGCAACAAACGCCGATACTCTGAGGCGGGATTTACAG 60
||||| |||||||||||||||||| |||||||||| ||||||||| ||||||| |||||
Sbjct 1 ATGGCAGATTCGACGGCGGACGAGTCAACAAACGCTGATACTCTGTGGCGGGAGTTACAC 60
Query 61 AAGGTACTGACGGAGATTTGGTACGACGGAGGAGGCAAAGATCGCGGTGAGATTGATGAG 120
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 AAGGTACTGCCGGAGATTTGGTACGACGGAGGAGGCAAAGATCACTGTGAGATTGATGAG 120
Query 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAAGCCAGAAGAATCTGAT 180
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAATCC-G--GAATCTGAT 177
Query 181 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGAGGATCATGATC 240
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 178 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTACACTCTCGAACAAGATCATGATC 237
Query 241 GAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATCCTAGAGTGGTTG 300
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 238 GAACCTATGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGCTATATCCTAGAGTGGCTG 297
Query 301 AAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTACCACCGTTTT-TGGATACC 359
|||||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||
Sbjct 298 AAGCATGAACGTACATGCCCTAGAACCAAACAAGTCCTTTACCACCGTTTTATG-ATACC 356
Query 360 AAACCATTCGATCAACGAGGTTATTATGCAATGGTGTCGAATTCACAACTTTGATCGGCC 419
|||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 357 AAACCATTTGATCAACGAGGTTATTAAGGAATGGTGTCTAATTCACAACTTTGATCGGCC 416
Query 420 AAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCA 479
|||| |||| ||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 417 AAAAACATCAGATGAAG---TCATTGACCTGTTCACTGGTGACCTTGAATCATTGCTTCA 473
Query 480 GCGTATTACCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCG 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCGTATTTCCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCT 533
Query 540 CCAGGTCAAGAGATATGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGAT 599
| ||| |||||||| | ||| ||| ||| || |||||||||||||||||||||||| ||
Sbjct 534 CAAGGCCAAGAGATTTTCCAGTGTTTGTGTCTACTTTGTCGCCAAAATCCCTGATTCCAT 593
Query 600 CACCAGGTTGCTCACT--GTTTTGGGCGATGA-GGTAG-ACTCGAATCCTGAGCTTCAAG 655
|||||||||||||||| | | | | || || || |||||||||||||| ||| ||
Sbjct 594 CACCAGGTTGCTCACTCCGCTCT---CTATTTCGG-AGGACTCGAATCCTGAGTTTCTAG 649
Query 656 AGAATATCATCACATCATTGTTCAACATG-TCGACTTTTGAGAAGAATAAAACACT-GCT 713
|||| ||| ||||| ||||| || || ||||||| |||||||||||||||||| | |
Sbjct 650 AGAACATCGTCACAGCATTGCACAT-ATTCTCGACTTCTGAGAAGAATAAAACACTAG-T 707
Query 714 TGCTGAGAATCCTCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCA 773
|||||| || |||| |||| | || |||||| |||||| | ||| | ||||||||| ||
Sbjct 708 TGCTGAAAACCCTCTTGTGCTTCCTCTGCTTGCAAAGTATATGAAGCAGGGGACAGTTCT 767
Query 774 AACaaaaaaaGTCTCTGCAGCGACTGTGTTTTCACTTTCACATACTGATTCTAACAAGAA 833
|| || | |||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 768 GACTCGAATACACTCTGCAGCGACTGTGAATTCACTTTCATACACTGATTCTAACAAGAT 827
Query 834 CATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAGGGTGATTC 893
|||||||| |||||||||| |||||||||||| ||| || || ||||||||||||||||
Sbjct 828 TATCATCGGTAACTCGGAAGTACTCAAGGCTCTCATACATGTAATCGAAGAGGGTGATTC 887
Query 894 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTGCTAATCTCTGTTTAGTAAAGGAGATCAG 953
||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 888 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTTCTAACCTCTGTCCAGTAAAGGAGATCAG 947
Query 954 GGAAAAGGCAGTTTCAGCGGGTCTGATTCGTGCGGCAACCACAAAGATCAAAGCAGGAAG 1013
|||||||| ||||||| |||| ||||||||||||||| || ||||||||||||||||||
Sbjct 948 TGAAAAGGCGGTTTCAGAGGGTTTGATTCGTGCGGCAATCAAAAAGATCAAAGCAGGAAG 1007
Query 1014 CAATGTGGATGTGTTGTTATCGT-TCTTGGCATC-GATTTCTACACACAACCGG-A--CT 1068
|||||| | |||||||||| | ||||||||| | |||||||||| |||| | ||
Sbjct 1008 CAATGTATCTATGTTGTTATC-TCTCTTGGCATTTG-TTTCTACACAGAACCACCAAACT 1065
Query 1069 ATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGAACTCA 1128
| ||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1066 ACCGAAGAAATGGATAATCTAGGGCTTATCTATGATCTGTTCAGTATCTTGAGGAACTCA 1125
Query 1129 AATAGCTTCGTGAATGAAGAGAACGCTTTAACCATCGTCGTTTA-CATTTGTAAAGGATA 1187
|||||||| |||||||| ||||||||| || ||||||| | | |||||||||| | ||
Sbjct 1126 AATAGCTTGGTGAATGATGAGAACGCTGTAGTCATCGTC-TACAACATTTGTAAAAGTTA 1184
Query 1188 CAGAGGCTTGCGAGA-TGTGGTCC-AGGAAGAGGCGACA-GGGAATGTGGTCCTAGAAGA 1244
|| || ||||| ||| |||||||| | || |||| || | |||| |||||||||||||||
Sbjct 1185 CAAAGCCTTGC-AGAATGTGGTCCTAAGA-GAGGAGAAACGGGA-TGTGGTCCTAGAAGA 1241
Query 1245 GGAGAATAAACACGGGACATTTACGAAGCTTGCGAAGCAAGAAGCAGGT 1293
|||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1242 GGAGAATAAACACGGGACATTTACGAGGCTTGAGAACCAAGAAGCAGGT 1290
> AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5:6064431-6066186
REVERSE LENGTH=1377
Length=1377
Score = 887 bits (480), Expect = 0.0
Identities = 1031/1284 (80%), Gaps = 89/1284 (7%)
Strand=Plus/Plus
Query 111 GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGA-AGCCAG 169
||||||||| || |||||||||||||||||||||||||| |||||||||||| | || |
Sbjct 132 GATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAGTAGAATCGAAGATA-CC-G 189
Query 170 AAGAATCTGATATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGA 229
||||||||||| |||||||||||||| || |||||||||||||||| |||||| || |
Sbjct 190 --GAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACTCTCCAATA 247
Query 230 GGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATC- 288
|||||||||||| |||||| |||| |||||||| ||||| | ||||||||||||||||
Sbjct 248 CGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAGATATATCA 307
Query 289 CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTAC-CACCG 347
| ||||||| ||||||||||||||||||| |||| |||||||||||| |||| | |||||
Sbjct 308 C-AGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAGTCCTTT-CTCACCG 365
Query 348 TTTTTGGATACCAAACCATTCGATCAACGAGGTT-ATTATGCAATGGTGTCGAATTCACA 406
| |||||||||||||||||| ||||| || || |||| ||||||||| | || |||
Sbjct 366 TCTTTGGATACCAAACCATTTGATCAGTGA-CTTGATTACGCAATGGTGCCTTGTTAACA 424
Query 407 ACTTTGATCGGCCAAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTG 466
| | ||||| | |||||||||||||||| |||| ||| ||||||||| ||||||| |
Sbjct 425 AATATGATCATCAAAAACCATCTGATGAATTAGTCGCTGAGCTGTTCACTAGTGACATAG 484
Query 467 AATCATTCCTTCAGCGTATTACCTC-TCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCA 525
|| |||| || ||||| || |||| ||| ||||| |||| |||||||| ||||||||||
Sbjct 485 AAGCATTGCTACAGCGGGTTTCCTCTTCC-TCCTCTGTTGCAGATCAGATAGAAGCTGCA 543
Query 526 AAAGAGCTTGC-CCGCCAGGTCAAGAGATATGCC-ACTGTCCGTGACTTCTTTGTCGCCA 583
||||||| ||| | |||| ||||| || | || | ||| || | ||||||||||||
Sbjct 544 AAAGAGC-TGCGTCACCAGACCAAGAAAT-TTCCTAATGTTCGGGTCTTCTTTGTCGCTG 601
Query 584 AAATCCCTGATTCGATCACCAGGTTGCTCA-------CTGT--TTTGGGCGATG-AGGTA 633
||||| |||||| |||||| | ||||||| || | ||||| ||| | | |||
Sbjct 602 GAATCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA-GTA 660
Query 634 GACTCGAATCCT-GAGCTTCAAGAGAATATCATCACATCATTGTTCAACATGTCGACTT- 691
||||| | | || ||||||||||||||||| ||||| | ||||||||| | |||| ||
Sbjct 661 GACTCTAGT-CTCGAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAACCTCTCGA-TTC 718
Query 692 TTGAGAAG-AATAAAACACTGCTTGCTGAGAATC-CTCAT-GTGATCCCACTGCTTACAA 748
||||| || ||||||||| || ||||||| || | || | |||||||| ||||||||||
Sbjct 719 TTGAG-AGTAATAAAACAGTGATTGCTGA-AAACTGTC-TAGTGATCCCTCTGCTTACAA 775
Query 749 AGTCTTTGAGGAAGGGGACAGATCA-A-ACaaaaaaaGTCTCTGCAGCGACTGTGTTTTC 806
||||||||| | ||||||||||| | | || || ||| | |||| |||||| | | ||
Sbjct 776 AGTCTTTGAAGCAGGGGACAGATGAGACACGAAGAAA--CGCTGCTGCGACTTTATCATC 833
Query 807 ACTTTCA--CATACTGATTCTAACAAGAACATCATCGGGAACTCGGAAGCACTCAAGGCT 864
||||||| ||| |||||||||||||| ||| || |||||||||||||| | ||||||
Sbjct 834 ACTTTCAGCCAT--TGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGTAAAGGCT 891
Query 865 CTGATAGATC-TAGTCGAAGAGGGTGATTCATTAGCCACCAGTGAAGCCTTTTCCGC-G- 921
|||| |||| || ||||||||||||||| ||||| |||| |||||| |||| | |
Sbjct 892 TTGATTGATCTTA-TCGAAGAGGGTGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGT 950
Query 922 CTTGCTAATCTCTGT-TTAGTAAAGGAGATC-AGGGAAAAGGCAGTTTCAGCGGGTCTGA 979
||| ||| |||||| || ||| ||||| | |||| ||||| |||||||||||| |||
Sbjct 951 CTT--TAACCTCTGTATT-GTACTGGAGAACAAGGG-AAAGGTTGTTTCAGCGGGTTTGA 1006
Query 980 TTCGTGCGGCAACCACAAAGATCAAAGCAGGAAGCAATGTGGATGTGTTGTTATCGT-TC 1038
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1007 TTCATGCGGCAACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATC-TCTC 1065
Query 1039 TTGGCATCGATTTCTACACACAACCGGACTATCGAAGAAATGGATAACCTAGGGTTTATA 1098
||||||| ||| ||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 1066 TTGGCATTGATATCTACACACAACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATC 1125
Query 1099 TATGATCTGTTCAGTATCTTGAGGAA-CTCAAATAGCTT-CGTGAATGAAGAGAACGCTT 1156
|||||||||||||||||||||||||| | | | |||||| | ||| || |||||||||
Sbjct 1126 TATGATCTGTTCAGTATCTTGAGGAAGC-CGAGTAGCTTGC-TGACTGGTGAGAACGCTG 1183
Query 1157 TAACCATCGTCGTTTA-CATTTGTAAAGGATACAGAGGCTTGCGAGATGTGGTCCAGGAA 1215
|| |||||| || | ||| ||| | | |||| | | || | | | ||||| |
Sbjct 1184 TAGTGATCGTC-TTCAACAT--GTAT-G-A--CAGAAACA-GAGACA-G-G-TCCAG-AC 1231
Query 1216 GAGGCGACAGGGAATGTGGTCCTAGAAGAGGAGAATAAACACGGGACATTTACGAAGCTT 1275
| | | | ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1232 T-G---A-A---A--GTGGTAGGAGAAGAGGAGAATCAACACGGGACATTTACGAAGCTT 1281
Query 1276 GCGAAGCAAGAAGCAGGTT-GTACGGTGAGAAAAGCACAAGCGATTTTACAGTGTATTAA 1334
|||||||||| | ||| || || | | |||||||||||||| ||| |||||||| || ||
Sbjct 1282 GCGAAGCAAGGATCAG-TTCGTGCAGCGAGAAAAGCACAAGGGATATTACAGTGGATAAA 1340
Query 1335 GACATTCGCTGA-TCGTAAAGAGC 1357
|| ||||| | | | |||||||||
Sbjct 1341 GAGATTCGTT-ACTGGTAAAGAGC 1363
> AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072310
REVERSE LENGTH=1483
Length=1483
Score = 697 bits (377), Expect = 0.0
Identities = 1092/1416 (77%), Gaps = 134/1416 (9%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGACGGCGGA--CGA-GGCAACAAACGCCGATA--CT----CTGAGGCGG 51
|||||||||||||||||||| ||| || |||||||||||||| || |||||||||
Sbjct 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172
Query 52 GA-TTTACAGAAGGTACTGACGGAG-ATTTGGTACGACGGAGGAGGCAAAGATCGC---- 105
|| || | ||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct 173 GAGTTGA-AGAAGGTACTGACGGAGAATTT-AAACGACGGAGGAGTTAAAGATCGCGTTG 230
Query 106 -G---GTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAAT 157
| ||| | |||||||||||| ||||||||||||| | | |||| || | ||||||
Sbjct 231 AGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAAT 290
Query 158 CGAAGAAGCCAGAA----GAATCTGATA-TATCTCCGGTGGAAGTTCCAAAAGAGTTTAT 212
|||||||| | ||| |||||||||| | ||| |||| |||||||| |||||||| |
Sbjct 291 CGAAGAAG-CGGAAGCGGGAATCTGATAGT-TCTTCGGTTGAAGTTCCGAAAGAGTTCA- 347
Query 213 A-TGTAAACTCTCGAAGAGGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTT 271
| |||| ||||||||||| |||||||||||| |||||| |||| |||||| ||||| |
Sbjct 348 AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACGT 407
Query 272 TTGAAAAGAGATATATC-CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAA 330
|||||||||||||||| | ||||||| |||| ||||| | |||||| |||| | |||||
Sbjct 408 ATGAAAAGAGATATATCAC-AGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466
Query 331 CAAGTTCTTTA-CCACCGTTT-TTGGATACCAAACCATTCGATCAACGAGGTT-ATTATG 387
||||| ||||| | | |||| || || ||| ||||||| |||||| || ||| |||| |
Sbjct 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGA-GTTGATTACG 523
Query 388 CAATGGTGTCGAATTCACAACTTTGATC-G---G--CCAAAACCATCTG--A-TGAAGAA 438
| |||||||| | |||| | ||||| | | ||||||||||||| | ||| |
Sbjct 524 CGATGGTGTCTTGCTAACAAATATGATCGGCCAGCCCCAAAACCATCTGATATTGACTAT 583
Query 439 GTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCAGCGTATTACCTCTCC-T-- 495
|| | || |||||||||| || ||| ||||| || |||||||| ||| ||||||| |
Sbjct 584 GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTCC 643
Query 496 TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGCCAGGTC-AAGAGATA 554
|||||||||| ||||||||||||||||||||||||||| |||| |||| | || | ||
Sbjct 644 TCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAA-AAATT 702
Query 555 TGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGATCACCAGG----T--- 607
|| || |||||||||||||||| || || |||||||||||||||||||| |
Sbjct 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762
Query 608 T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGCTTCAAGAGAATATCAT 665
| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822
Query 666 CACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACACTGCTTGCTGAGAATCC 725
|||| | |||||||||||||||||||| ||||||||||||||| | |||||||| || ||
Sbjct 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAA-CC 881
Query 726 -TCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCAAACaa-aa-aa 782
||| ||||||||||||||| |||||||| ||| | ||||| ||| | |||| || ||
Sbjct 882 ATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAA 941
Query 783 aGTCTCTGCAGCGACTGT-GTTTTCACTTTCACATACTGATTCTAACAAGAACATCATCG 841
| | || || |||| | | | |||||||| | | |||||||||||||| |||||| |
Sbjct 942 A--CGCTACATTGACTTTAGCGT-CACTTTCAGACATTGATTCTAACAAGATCATCATAG 998
Query 842 GGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAG--GG-TGA-TTCATTA 897
||||||||| ||||||||||||||||||||||||| ||| ||| || ||| || || |
Sbjct 999 GGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTT-ATCA 1057
Query 898 GCCAC-CAGTGAAGC-CTTTTCCGC-GCTTGCTA-ATCTCTGTT-T-A-GTAAAGG-AGA 949
|| || || ||| || |||| | || | || || | ||||||| | | | ||||| |||
Sbjct 1058 GCTACTCA-TGATGCTCTTTGC-GCTG-TTA-TAGACCTCTGTTGTGATG-AAAGGGAGA 1112
Query 950 TCAGGGAAAAGGCAGTT-TCAGC-GGG-TCTGATTCGTGCGGCAACCACAAAGATCAAAG 1006
| || ||||||| | | || | ||| | || || ||| |||| || ||| |||||||
Sbjct 1113 ACTGGAAAAAGGC-GATCTC-GTTGGGGT-TGGCTCCTGCTGCAATCAAAAATATCAAAG 1169
Query 1007 CAGGAAGCAATGTGGATGTGTTGTTATCGTTC-TTGGCATCGATTTCTACACAC-AAC-C 1063
|| |||| ||| || || | ||| | | | ||||||| ||||||| ||||| ||| |
Sbjct 1170 CAAGAAGAAATTTGTTTGAATCCTTAGC-TGCCTTGGCATTGATTTCTCCACACGAACGC 1228
Query 1064 GGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGA 1123
| |||| | ||| ||| ||| |||||| |||| ||||||||||| |||||||||||||
Sbjct 1229 GT--TATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGA 1286
Query 1124 ACTCAAATAGCTTCGTGAAT-GAAGAGAACGCTTTAACCATCGTCGTTTACATTTGTAAA 1182
| ||| | || | |||| | | ||||||||| || ||||| | |||| |||
Sbjct 1287 AAACAAGTTGCATGGTGACTTGT-GAGAACGCTGTAGTGATCGTAGGCAACAT--GTAT- 1342
Query 1183 GGATACAGAGGCTTGCGAGATGTGGTCCAGGAAGAGGCGACAGGGAATG-TGGTCCTAGA 1241
| || | || | | || | | | || | |||| | | | | ||| | |||
Sbjct 1343 GC-TAAA-AG-CA-GAGAAA-G-G-TCTATTAAGA----A-A---A-TCCTGG-C--AGA 1383
Query 1242 AGAGGAGAATAAACACGGGACATTTACGAAGCTTGCGAA-GCAAGAAGCAGGTTGTA-CG 1299
|||||||||| ||||| ||||||||| ||| |||| || ||||| | ||| |||| ||
Sbjct 1384 AGAGGAGAATCAACACAAGACATTTACAAAGATTGC-AACGCAAGGATCAG-TTGTTGCG 1441
Query 1300 GTGA-GAAAAGCACAAGCGATTTTACAGTGTATTAA 1334
|||| |||| ||||||| ||||||||||||||||||
Sbjct 1442 GTGATGAAA-GCACAAGGGATTTTACAGTGTATTAA 1476
> AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing
protein / armadillo/beta-catenin repeat family protein |
chr2:3782956-3784075 FORWARD LENGTH=1120
Length=1120
Score = 394 bits (213), Expect = 1e-108
Identities = 699/917 (76%), Gaps = 99/917 (11%)
Strand=Plus/Plus
Query 268 ACTTTTGAAAAGAGATATATC-CTAGAGTGGT-TGAAGCATGAA-CGTACATGCCCCAGA 324
|||| |||||||||||||||| | ||||| || |||| ||| || |||||||| |||| |
Sbjct 4 ACTTATGAAAAGAGATATATCAC-AGAGT-GTATGAACCAT-AACCGTACATGTCCCA-A 59
Query 325 A-CCAAACAAGTTCTTTA-CCACCGTTTTTGGATACCAAACCATTCGATCAACGAGGTT- 381
| |||||||||| || || | | || ||| || || ||||||| ||| || || |||
Sbjct 60 ATCCAAACAAGTCCTCTATCGAGTGTGTTT-GACGCCCAACCATTTGATTAATGA-GTTG 117
Query 382 ATTATGCAATGGTGTC--G--A--ATTCA-CAACTTTGATC-G---G--CCAAAACCATC 428
|||| || |||||||| | | | | | ||| | ||||| | | |||||||||||
Sbjct 118 ATTACGCGATGGTGTCTTGTTAGCAAT-AGCAAATATGATCGGCCAGCCCCAAAACCATC 176
Query 429 TG--A-TGAAGA-AGTCATTGACCTGTTCACTGG-TGACATTGAATCATTCCTTCAGCGT 483
|| | |||| | ||| | || |||||||| || || ||| |||| || ||||||||
Sbjct 177 TGATATTGAA-ATAGTAACGGAGCTGTTCAC-GGATGGCATCGAATTGTTGCTTCAGCGG 234
Query 484 ATTACCTCTCC-T--TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGC 540
||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 235 ATTTCCTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCTC 294
Query 541 CAGGT-CAAGAGATATG-CCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGA 598
|| | | || || || ||| ||||||||||||||| || || | |||||||||
Sbjct 295 CA-ATCCTCGAAATTTGTCCA-AGTCCGTGACTTCTTTATCAAGGAACTTTCTGATTCGA 352
Query 599 TCACCAGG----T---T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGC 649
|||||||| | | |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 353 TCACCAGGTTACTCACTCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGC 412
Query 650 TTCAAGAGAATATCATCACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACAC 709
|||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 413 TTCAAGAGAATATCGTCACAACATTGTTCAACATGTCGACTTTCGAGGAGAATAAAACAC 472
Query 710 TGCTTGCTGAGAATCC-TCATGTGATCCCACTGCTTACAAAGTCTT-TGAGGAAGGGGAC 767
| |||||||| || || ||| |||||||| ||||| |||||| || ||| | || | |
Sbjct 473 TACTTGCTGAAAA-CCATCAAGTGATCCCTGTGCTTGCAAAGT-TTATGAAGCAGAAGTC 530
Query 768 AGATCAAACaa-aa-aaaGTCTCTGCAGCGACT-GTGTTTTCACTTTCACATACTGATTC 824
|| | |||| || ||| | || || |||| | || | |||||| | | | ||||||
Sbjct 531 AGTTGTGACAAGAAGAAA--CGCTACATTGACTTGAGTGT-CACTTTTAGACATTGATTC 587
Query 825 TAACAAGAACATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCT-AGTCGAAG 883
|||||||| |||||| |||||||| | |||||||||||||||||||||||| | ||| |
Sbjct 588 TAACAAGATCATCATAGGGAACTCAGTAGCACTCAAGGCTCTGATAGATCTTA-TCGGGG 646
Query 884 AG--GG-TGA-TTCATTAGCCAC-CAGTGAAGC-CTTTTCCGCGCTTGCTA-AT-C-TCT 934
|| || ||| || || ||| || || |||||| |||| ||||| | || || | |||
Sbjct 647 AGTTGGATGACTT-ATCAGCTACTCA-TGAAGCTCTTT---GCGCT-GTTATATACCTCT 700
Query 935 GTT-T-A-GTAAA-GGAGATCAGGGAAAAGGCAGTTTCAGC-GGG-TCTGATTCGTGCGG 988
||| | | | ||| ||||| | || |||||||| | || | ||| | ||| || | |
Sbjct 701 GTTGTGATG-AAATGGAGAACTGGAAAAAGGCAATCTC-GTTGGGGT-TGACTCCTTTTG 757
Query 989 CAACCACAAAGATCAAAGCAGGAAGCAATGTGGATGTGT-T-GTTA-TCGTTCTTGGCAT 1045
|| || ||| ||||||||| |||| ||| | | | || | |||| | | ||||||||
Sbjct 758 CAGTCAGAAATATCAAAGCAAGAAGAAAT-TCGTT-TGACTCGTTAGTTAT-CTTGGCAT 814
Query 1046 CGATTTCTACACAC-AAC-CGGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGA 1103
||||||| |||| ||| || |||| | ||| ||| ||| | ||||| || |||||
Sbjct 815 TGATTTCTTTACACGAACGCGT--TATCCAGGAACTGGCTAA--T-GGGTT-ATCTATGA 868
Query 1104 TCTGTTCAGTATCTTGA 1120
|||||| ||||||||||
Sbjct 869 TCTGTTAAGTATCTTGA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5