BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350938 Length=1416 Score E Sequences producing significant alignments: (Bits) Value AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5... 1504 0.0 AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5... 887 0.0 AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5... 697 0.0 AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing... 394 1e-108 > AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5:6068474-6070042 REVERSE LENGTH=1338 Length=1338 Score = 1504 bits (814), Expect = 0.0 Identities = 1150/1309 (88%), Gaps = 35/1309 (3%) Strand=Plus/Plus Query 1 ATGGCGGATTCGACGGCGGACGAGGCAACAAACGCCGATACTCTGAGGCGGGATTTACAG 60 ||||| |||||||||||||||||| |||||||||| ||||||||| ||||||| ||||| Sbjct 1 ATGGCAGATTCGACGGCGGACGAGTCAACAAACGCTGATACTCTGTGGCGGGAGTTACAC 60 Query 61 AAGGTACTGACGGAGATTTGGTACGACGGAGGAGGCAAAGATCGCGGTGAGATTGATGAG 120 ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 61 AAGGTACTGCCGGAGATTTGGTACGACGGAGGAGGCAAAGATCACTGTGAGATTGATGAG 120 Query 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAAGCCAGAAGAATCTGAT 180 |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAATCC-G--GAATCTGAT 177 Query 181 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGAGGATCATGATC 240 ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 178 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTACACTCTCGAACAAGATCATGATC 237 Query 241 GAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATCCTAGAGTGGTTG 300 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 238 GAACCTATGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGCTATATCCTAGAGTGGCTG 297 Query 301 AAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTACCACCGTTTT-TGGATACC 359 |||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct 298 AAGCATGAACGTACATGCCCTAGAACCAAACAAGTCCTTTACCACCGTTTTATG-ATACC 356 Query 360 AAACCATTCGATCAACGAGGTTATTATGCAATGGTGTCGAATTCACAACTTTGATCGGCC 419 |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| Sbjct 357 AAACCATTTGATCAACGAGGTTATTAAGGAATGGTGTCTAATTCACAACTTTGATCGGCC 416 Query 420 AAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCA 479 |||| |||| ||||||| ||||||||||||||||||||||| |||||||||| ||||| Sbjct 417 AAAAACATCAGATGAAG---TCATTGACCTGTTCACTGGTGACCTTGAATCATTGCTTCA 473 Query 480 GCGTATTACCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCG 539 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GCGTATTTCCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCT 533 Query 540 CCAGGTCAAGAGATATGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGAT 599 | ||| |||||||| | ||| ||| ||| || |||||||||||||||||||||||| || Sbjct 534 CAAGGCCAAGAGATTTTCCAGTGTTTGTGTCTACTTTGTCGCCAAAATCCCTGATTCCAT 593 Query 600 CACCAGGTTGCTCACT--GTTTTGGGCGATGA-GGTAG-ACTCGAATCCTGAGCTTCAAG 655 |||||||||||||||| | | | | || || || |||||||||||||| ||| || Sbjct 594 CACCAGGTTGCTCACTCCGCTCT---CTATTTCGG-AGGACTCGAATCCTGAGTTTCTAG 649 Query 656 AGAATATCATCACATCATTGTTCAACATG-TCGACTTTTGAGAAGAATAAAACACT-GCT 713 |||| ||| ||||| ||||| || || ||||||| |||||||||||||||||| | | Sbjct 650 AGAACATCGTCACAGCATTGCACAT-ATTCTCGACTTCTGAGAAGAATAAAACACTAG-T 707 Query 714 TGCTGAGAATCCTCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCA 773 |||||| || |||| |||| | || |||||| |||||| | ||| | ||||||||| || Sbjct 708 TGCTGAAAACCCTCTTGTGCTTCCTCTGCTTGCAAAGTATATGAAGCAGGGGACAGTTCT 767 Query 774 AACaaaaaaaGTCTCTGCAGCGACTGTGTTTTCACTTTCACATACTGATTCTAACAAGAA 833 || || | |||||||||||||||| |||||||||| | |||||||||||||||| Sbjct 768 GACTCGAATACACTCTGCAGCGACTGTGAATTCACTTTCATACACTGATTCTAACAAGAT 827 Query 834 CATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAGGGTGATTC 893 |||||||| |||||||||| |||||||||||| ||| || || |||||||||||||||| Sbjct 828 TATCATCGGTAACTCGGAAGTACTCAAGGCTCTCATACATGTAATCGAAGAGGGTGATTC 887 Query 894 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTGCTAATCTCTGTTTAGTAAAGGAGATCAG 953 ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| Sbjct 888 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTTCTAACCTCTGTCCAGTAAAGGAGATCAG 947 Query 954 GGAAAAGGCAGTTTCAGCGGGTCTGATTCGTGCGGCAACCACAAAGATCAAAGCAGGAAG 1013 |||||||| ||||||| |||| ||||||||||||||| || |||||||||||||||||| Sbjct 948 TGAAAAGGCGGTTTCAGAGGGTTTGATTCGTGCGGCAATCAAAAAGATCAAAGCAGGAAG 1007 Query 1014 CAATGTGGATGTGTTGTTATCGT-TCTTGGCATC-GATTTCTACACACAACCGG-A--CT 1068 |||||| | |||||||||| | ||||||||| | |||||||||| |||| | || Sbjct 1008 CAATGTATCTATGTTGTTATC-TCTCTTGGCATTTG-TTTCTACACAGAACCACCAAACT 1065 Query 1069 ATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGAACTCA 1128 | ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 1066 ACCGAAGAAATGGATAATCTAGGGCTTATCTATGATCTGTTCAGTATCTTGAGGAACTCA 1125 Query 1129 AATAGCTTCGTGAATGAAGAGAACGCTTTAACCATCGTCGTTTA-CATTTGTAAAGGATA 1187 |||||||| |||||||| ||||||||| || ||||||| | | |||||||||| | || Sbjct 1126 AATAGCTTGGTGAATGATGAGAACGCTGTAGTCATCGTC-TACAACATTTGTAAAAGTTA 1184 Query 1188 CAGAGGCTTGCGAGA-TGTGGTCC-AGGAAGAGGCGACA-GGGAATGTGGTCCTAGAAGA 1244 || || ||||| ||| |||||||| | || |||| || | |||| ||||||||||||||| Sbjct 1185 CAAAGCCTTGC-AGAATGTGGTCCTAAGA-GAGGAGAAACGGGA-TGTGGTCCTAGAAGA 1241 Query 1245 GGAGAATAAACACGGGACATTTACGAAGCTTGCGAAGCAAGAAGCAGGT 1293 |||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 1242 GGAGAATAAACACGGGACATTTACGAGGCTTGAGAACCAAGAAGCAGGT 1290 > AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5:6064431-6066186 REVERSE LENGTH=1377 Length=1377 Score = 887 bits (480), Expect = 0.0 Identities = 1031/1284 (80%), Gaps = 89/1284 (7%) Strand=Plus/Plus Query 111 GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGA-AGCCAG 169 ||||||||| || |||||||||||||||||||||||||| |||||||||||| | || | Sbjct 132 GATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAGTAGAATCGAAGATA-CC-G 189 Query 170 AAGAATCTGATATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGA 229 ||||||||||| |||||||||||||| || |||||||||||||||| |||||| || | Sbjct 190 --GAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACTCTCCAATA 247 Query 230 GGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATC- 288 |||||||||||| |||||| |||| |||||||| ||||| | |||||||||||||||| Sbjct 248 CGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAGATATATCA 307 Query 289 CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTAC-CACCG 347 | ||||||| ||||||||||||||||||| |||| |||||||||||| |||| | ||||| Sbjct 308 C-AGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAGTCCTTT-CTCACCG 365 Query 348 TTTTTGGATACCAAACCATTCGATCAACGAGGTT-ATTATGCAATGGTGTCGAATTCACA 406 | |||||||||||||||||| ||||| || || |||| ||||||||| | || ||| Sbjct 366 TCTTTGGATACCAAACCATTTGATCAGTGA-CTTGATTACGCAATGGTGCCTTGTTAACA 424 Query 407 ACTTTGATCGGCCAAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTG 466 | | ||||| | |||||||||||||||| |||| ||| ||||||||| ||||||| | Sbjct 425 AATATGATCATCAAAAACCATCTGATGAATTAGTCGCTGAGCTGTTCACTAGTGACATAG 484 Query 467 AATCATTCCTTCAGCGTATTACCTC-TCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCA 525 || |||| || ||||| || |||| ||| ||||| |||| |||||||| |||||||||| Sbjct 485 AAGCATTGCTACAGCGGGTTTCCTCTTCC-TCCTCTGTTGCAGATCAGATAGAAGCTGCA 543 Query 526 AAAGAGCTTGC-CCGCCAGGTCAAGAGATATGCC-ACTGTCCGTGACTTCTTTGTCGCCA 583 ||||||| ||| | |||| ||||| || | || | ||| || | |||||||||||| Sbjct 544 AAAGAGC-TGCGTCACCAGACCAAGAAAT-TTCCTAATGTTCGGGTCTTCTTTGTCGCTG 601 Query 584 AAATCCCTGATTCGATCACCAGGTTGCTCA-------CTGT--TTTGGGCGATG-AGGTA 633 ||||| |||||| |||||| | ||||||| || | ||||| ||| | | ||| Sbjct 602 GAATCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA-GTA 660 Query 634 GACTCGAATCCT-GAGCTTCAAGAGAATATCATCACATCATTGTTCAACATGTCGACTT- 691 ||||| | | || ||||||||||||||||| ||||| | ||||||||| | |||| || Sbjct 661 GACTCTAGT-CTCGAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAACCTCTCGA-TTC 718 Query 692 TTGAGAAG-AATAAAACACTGCTTGCTGAGAATC-CTCAT-GTGATCCCACTGCTTACAA 748 ||||| || ||||||||| || ||||||| || | || | |||||||| |||||||||| Sbjct 719 TTGAG-AGTAATAAAACAGTGATTGCTGA-AAACTGTC-TAGTGATCCCTCTGCTTACAA 775 Query 749 AGTCTTTGAGGAAGGGGACAGATCA-A-ACaaaaaaaGTCTCTGCAGCGACTGTGTTTTC 806 ||||||||| | ||||||||||| | | || || ||| | |||| |||||| | | || Sbjct 776 AGTCTTTGAAGCAGGGGACAGATGAGACACGAAGAAA--CGCTGCTGCGACTTTATCATC 833 Query 807 ACTTTCA--CATACTGATTCTAACAAGAACATCATCGGGAACTCGGAAGCACTCAAGGCT 864 ||||||| ||| |||||||||||||| ||| || |||||||||||||| | |||||| Sbjct 834 ACTTTCAGCCAT--TGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGTAAAGGCT 891 Query 865 CTGATAGATC-TAGTCGAAGAGGGTGATTCATTAGCCACCAGTGAAGCCTTTTCCGC-G- 921 |||| |||| || ||||||||||||||| ||||| |||| |||||| |||| | | Sbjct 892 TTGATTGATCTTA-TCGAAGAGGGTGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGT 950 Query 922 CTTGCTAATCTCTGT-TTAGTAAAGGAGATC-AGGGAAAAGGCAGTTTCAGCGGGTCTGA 979 ||| ||| |||||| || ||| ||||| | |||| ||||| |||||||||||| ||| Sbjct 951 CTT--TAACCTCTGTATT-GTACTGGAGAACAAGGG-AAAGGTTGTTTCAGCGGGTTTGA 1006 Query 980 TTCGTGCGGCAACCACAAAGATCAAAGCAGGAAGCAATGTGGATGTGTTGTTATCGT-TC 1038 ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | || Sbjct 1007 TTCATGCGGCAACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATC-TCTC 1065 Query 1039 TTGGCATCGATTTCTACACACAACCGGACTATCGAAGAAATGGATAACCTAGGGTTTATA 1098 ||||||| ||| ||||||||||||||| || | |||||||||||||| ||||||||||| Sbjct 1066 TTGGCATTGATATCTACACACAACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATC 1125 Query 1099 TATGATCTGTTCAGTATCTTGAGGAA-CTCAAATAGCTT-CGTGAATGAAGAGAACGCTT 1156 |||||||||||||||||||||||||| | | | |||||| | ||| || ||||||||| Sbjct 1126 TATGATCTGTTCAGTATCTTGAGGAAGC-CGAGTAGCTTGC-TGACTGGTGAGAACGCTG 1183 Query 1157 TAACCATCGTCGTTTA-CATTTGTAAAGGATACAGAGGCTTGCGAGATGTGGTCCAGGAA 1215 || |||||| || | ||| ||| | | |||| | | || | | | ||||| | Sbjct 1184 TAGTGATCGTC-TTCAACAT--GTAT-G-A--CAGAAACA-GAGACA-G-G-TCCAG-AC 1231 Query 1216 GAGGCGACAGGGAATGTGGTCCTAGAAGAGGAGAATAAACACGGGACATTTACGAAGCTT 1275 | | | | ||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1232 T-G---A-A---A--GTGGTAGGAGAAGAGGAGAATCAACACGGGACATTTACGAAGCTT 1281 Query 1276 GCGAAGCAAGAAGCAGGTT-GTACGGTGAGAAAAGCACAAGCGATTTTACAGTGTATTAA 1334 |||||||||| | ||| || || | | |||||||||||||| ||| |||||||| || || Sbjct 1282 GCGAAGCAAGGATCAG-TTCGTGCAGCGAGAAAAGCACAAGGGATATTACAGTGGATAAA 1340 Query 1335 GACATTCGCTGA-TCGTAAAGAGC 1357 || ||||| | | | ||||||||| Sbjct 1341 GAGATTCGTT-ACTGGTAAAGAGC 1363 > AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072310 REVERSE LENGTH=1483 Length=1483 Score = 697 bits (377), Expect = 0.0 Identities = 1092/1416 (77%), Gaps = 134/1416 (9%) Strand=Plus/Plus Query 1 ATGGCGGATTCGACGGCGGA--CGA-GGCAACAAACGCCGATA--CT----CTGAGGCGG 51 |||||||||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172 Query 52 GA-TTTACAGAAGGTACTGACGGAG-ATTTGGTACGACGGAGGAGGCAAAGATCGC---- 105 || || | ||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct 173 GAGTTGA-AGAAGGTACTGACGGAGAATTT-AAACGACGGAGGAGTTAAAGATCGCGTTG 230 Query 106 -G---GTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAAT 157 | ||| | |||||||||||| ||||||||||||| | | |||| || | |||||| Sbjct 231 AGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAAT 290 Query 158 CGAAGAAGCCAGAA----GAATCTGATA-TATCTCCGGTGGAAGTTCCAAAAGAGTTTAT 212 |||||||| | ||| |||||||||| | ||| |||| |||||||| |||||||| | Sbjct 291 CGAAGAAG-CGGAAGCGGGAATCTGATAGT-TCTTCGGTTGAAGTTCCGAAAGAGTTCA- 347 Query 213 A-TGTAAACTCTCGAAGAGGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTT 271 | |||| ||||||||||| |||||||||||| |||||| |||| |||||| ||||| | Sbjct 348 AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACGT 407 Query 272 TTGAAAAGAGATATATC-CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAA 330 |||||||||||||||| | ||||||| |||| ||||| | |||||| |||| | ||||| Sbjct 408 ATGAAAAGAGATATATCAC-AGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466 Query 331 CAAGTTCTTTA-CCACCGTTT-TTGGATACCAAACCATTCGATCAACGAGGTT-ATTATG 387 ||||| ||||| | | |||| || || ||| ||||||| |||||| || ||| |||| | Sbjct 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGA-GTTGATTACG 523 Query 388 CAATGGTGTCGAATTCACAACTTTGATC-G---G--CCAAAACCATCTG--A-TGAAGAA 438 | |||||||| | |||| | ||||| | | ||||||||||||| | ||| | Sbjct 524 CGATGGTGTCTTGCTAACAAATATGATCGGCCAGCCCCAAAACCATCTGATATTGACTAT 583 Query 439 GTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCAGCGTATTACCTCTCC-T-- 495 || | || |||||||||| || ||| ||||| || |||||||| ||| ||||||| | Sbjct 584 GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTCC 643 Query 496 TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGCCAGGTC-AAGAGATA 554 |||||||||| ||||||||||||||||||||||||||| |||| |||| | || | || Sbjct 644 TCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAA-AAATT 702 Query 555 TGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGATCACCAGG----T--- 607 || || |||||||||||||||| || || |||||||||||||||||||| | Sbjct 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762 Query 608 T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGCTTCAAGAGAATATCAT 665 | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822 Query 666 CACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACACTGCTTGCTGAGAATCC 725 |||| | |||||||||||||||||||| ||||||||||||||| | |||||||| || || Sbjct 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAA-CC 881 Query 726 -TCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCAAACaa-aa-aa 782 ||| ||||||||||||||| |||||||| ||| | ||||| ||| | |||| || || Sbjct 882 ATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAA 941 Query 783 aGTCTCTGCAGCGACTGT-GTTTTCACTTTCACATACTGATTCTAACAAGAACATCATCG 841 | | || || |||| | | | |||||||| | | |||||||||||||| |||||| | Sbjct 942 A--CGCTACATTGACTTTAGCGT-CACTTTCAGACATTGATTCTAACAAGATCATCATAG 998 Query 842 GGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAG--GG-TGA-TTCATTA 897 ||||||||| ||||||||||||||||||||||||| ||| ||| || ||| || || | Sbjct 999 GGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTT-ATCA 1057 Query 898 GCCAC-CAGTGAAGC-CTTTTCCGC-GCTTGCTA-ATCTCTGTT-T-A-GTAAAGG-AGA 949 || || || ||| || |||| | || | || || | ||||||| | | | ||||| ||| Sbjct 1058 GCTACTCA-TGATGCTCTTTGC-GCTG-TTA-TAGACCTCTGTTGTGATG-AAAGGGAGA 1112 Query 950 TCAGGGAAAAGGCAGTT-TCAGC-GGG-TCTGATTCGTGCGGCAACCACAAAGATCAAAG 1006 | || ||||||| | | || | ||| | || || ||| |||| || ||| ||||||| Sbjct 1113 ACTGGAAAAAGGC-GATCTC-GTTGGGGT-TGGCTCCTGCTGCAATCAAAAATATCAAAG 1169 Query 1007 CAGGAAGCAATGTGGATGTGTTGTTATCGTTC-TTGGCATCGATTTCTACACAC-AAC-C 1063 || |||| ||| || || | ||| | | | ||||||| ||||||| ||||| ||| | Sbjct 1170 CAAGAAGAAATTTGTTTGAATCCTTAGC-TGCCTTGGCATTGATTTCTCCACACGAACGC 1228 Query 1064 GGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGA 1123 | |||| | ||| ||| ||| |||||| |||| ||||||||||| ||||||||||||| Sbjct 1229 GT--TATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGA 1286 Query 1124 ACTCAAATAGCTTCGTGAAT-GAAGAGAACGCTTTAACCATCGTCGTTTACATTTGTAAA 1182 | ||| | || | |||| | | ||||||||| || ||||| | |||| ||| Sbjct 1287 AAACAAGTTGCATGGTGACTTGT-GAGAACGCTGTAGTGATCGTAGGCAACAT--GTAT- 1342 Query 1183 GGATACAGAGGCTTGCGAGATGTGGTCCAGGAAGAGGCGACAGGGAATG-TGGTCCTAGA 1241 | || | || | | || | | | || | |||| | | | | ||| | ||| Sbjct 1343 GC-TAAA-AG-CA-GAGAAA-G-G-TCTATTAAGA----A-A---A-TCCTGG-C--AGA 1383 Query 1242 AGAGGAGAATAAACACGGGACATTTACGAAGCTTGCGAA-GCAAGAAGCAGGTTGTA-CG 1299 |||||||||| ||||| ||||||||| ||| |||| || ||||| | ||| |||| || Sbjct 1384 AGAGGAGAATCAACACAAGACATTTACAAAGATTGC-AACGCAAGGATCAG-TTGTTGCG 1441 Query 1300 GTGA-GAAAAGCACAAGCGATTTTACAGTGTATTAA 1334 |||| |||| ||||||| |||||||||||||||||| Sbjct 1442 GTGATGAAA-GCACAAGGGATTTTACAGTGTATTAA 1476 > AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing protein / armadillo/beta-catenin repeat family protein | chr2:3782956-3784075 FORWARD LENGTH=1120 Length=1120 Score = 394 bits (213), Expect = 1e-108 Identities = 699/917 (76%), Gaps = 99/917 (11%) Strand=Plus/Plus Query 268 ACTTTTGAAAAGAGATATATC-CTAGAGTGGT-TGAAGCATGAA-CGTACATGCCCCAGA 324 |||| |||||||||||||||| | ||||| || |||| ||| || |||||||| |||| | Sbjct 4 ACTTATGAAAAGAGATATATCAC-AGAGT-GTATGAACCAT-AACCGTACATGTCCCA-A 59 Query 325 A-CCAAACAAGTTCTTTA-CCACCGTTTTTGGATACCAAACCATTCGATCAACGAGGTT- 381 | |||||||||| || || | | || ||| || || ||||||| ||| || || ||| Sbjct 60 ATCCAAACAAGTCCTCTATCGAGTGTGTTT-GACGCCCAACCATTTGATTAATGA-GTTG 117 Query 382 ATTATGCAATGGTGTC--G--A--ATTCA-CAACTTTGATC-G---G--CCAAAACCATC 428 |||| || |||||||| | | | | | ||| | ||||| | | ||||||||||| Sbjct 118 ATTACGCGATGGTGTCTTGTTAGCAAT-AGCAAATATGATCGGCCAGCCCCAAAACCATC 176 Query 429 TG--A-TGAAGA-AGTCATTGACCTGTTCACTGG-TGACATTGAATCATTCCTTCAGCGT 483 || | |||| | ||| | || |||||||| || || ||| |||| || |||||||| Sbjct 177 TGATATTGAA-ATAGTAACGGAGCTGTTCAC-GGATGGCATCGAATTGTTGCTTCAGCGG 234 Query 484 ATTACCTCTCC-T--TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGC 540 ||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 235 ATTTCCTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCTC 294 Query 541 CAGGT-CAAGAGATATG-CCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGA 598 || | | || || || ||| ||||||||||||||| || || | ||||||||| Sbjct 295 CA-ATCCTCGAAATTTGTCCA-AGTCCGTGACTTCTTTATCAAGGAACTTTCTGATTCGA 352 Query 599 TCACCAGG----T---T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGC 649 |||||||| | | |||| ||||||||||||||||||||||||||||||| |||| Sbjct 353 TCACCAGGTTACTCACTCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGC 412 Query 650 TTCAAGAGAATATCATCACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACAC 709 |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 413 TTCAAGAGAATATCGTCACAACATTGTTCAACATGTCGACTTTCGAGGAGAATAAAACAC 472 Query 710 TGCTTGCTGAGAATCC-TCATGTGATCCCACTGCTTACAAAGTCTT-TGAGGAAGGGGAC 767 | |||||||| || || ||| |||||||| ||||| |||||| || ||| | || | | Sbjct 473 TACTTGCTGAAAA-CCATCAAGTGATCCCTGTGCTTGCAAAGT-TTATGAAGCAGAAGTC 530 Query 768 AGATCAAACaa-aa-aaaGTCTCTGCAGCGACT-GTGTTTTCACTTTCACATACTGATTC 824 || | |||| || ||| | || || |||| | || | |||||| | | | |||||| Sbjct 531 AGTTGTGACAAGAAGAAA--CGCTACATTGACTTGAGTGT-CACTTTTAGACATTGATTC 587 Query 825 TAACAAGAACATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCT-AGTCGAAG 883 |||||||| |||||| |||||||| | |||||||||||||||||||||||| | ||| | Sbjct 588 TAACAAGATCATCATAGGGAACTCAGTAGCACTCAAGGCTCTGATAGATCTTA-TCGGGG 646 Query 884 AG--GG-TGA-TTCATTAGCCAC-CAGTGAAGC-CTTTTCCGCGCTTGCTA-AT-C-TCT 934 || || ||| || || ||| || || |||||| |||| ||||| | || || | ||| Sbjct 647 AGTTGGATGACTT-ATCAGCTACTCA-TGAAGCTCTTT---GCGCT-GTTATATACCTCT 700 Query 935 GTT-T-A-GTAAA-GGAGATCAGGGAAAAGGCAGTTTCAGC-GGG-TCTGATTCGTGCGG 988 ||| | | | ||| ||||| | || |||||||| | || | ||| | ||| || | | Sbjct 701 GTTGTGATG-AAATGGAGAACTGGAAAAAGGCAATCTC-GTTGGGGT-TGACTCCTTTTG 757 Query 989 CAACCACAAAGATCAAAGCAGGAAGCAATGTGGATGTGT-T-GTTA-TCGTTCTTGGCAT 1045 || || ||| ||||||||| |||| ||| | | | || | |||| | | |||||||| Sbjct 758 CAGTCAGAAATATCAAAGCAAGAAGAAAT-TCGTT-TGACTCGTTAGTTAT-CTTGGCAT 814 Query 1046 CGATTTCTACACAC-AAC-CGGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGA 1103 ||||||| |||| ||| || |||| | ||| ||| ||| | ||||| || ||||| Sbjct 815 TGATTTCTTTACACGAACGCGT--TATCCAGGAACTGGCTAA--T-GGGTT-ATCTATGA 868 Query 1104 TCTGTTCAGTATCTTGA 1120 |||||| |||||||||| Sbjct 869 TCTGTTAAGTATCTTGA 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69778757550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5