BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351013
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19110.1 | Symbols: | Eukaryotic aspartyl protease family p... 1679 0.0
> AT5G19110.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:6411561-6413170 REVERSE LENGTH=1377
Length=1377
Score = 1679 bits (909), Expect = 0.0
Identities = 1122/1222 (92%), Gaps = 25/1222 (2%)
Strand=Plus/Plus
Query 5 GTAGCCTCATGCGCCTCA-TAGTCTTCCTTTCCATTTTCGCAGCCATAACTC-GAAAATC 62
||||||||| |||||| | ||||||||||||||||||||||||||||| ||| | |||||
Sbjct 8 GTAGCCTCACGCGCCT-ACTAGTCTTCCTTTCCATTTTCGCAGCCATAGCTCTG-AAATC 65
Query 63 GAACTCTCAGTACCTTTTTCCAATCACCAAACACGAACCCACCAATC-AGTTCTACACCA 121
|||||||| |||||| |||| |||||||| |||||||||||||||| | ||||||||||
Sbjct 66 AAACTCTCAATACCTTCTTCCGATCACCAAGCACGAACCCACCAATCTA-TTCTACACCA 124
Query 122 CTTTCAACATTGGATCC-CCGACAAAATCTCCCGTAAACCTACTCCTCGACCTCGGAACC 180
|||||||| | |||||| ||| |||||||||| |||||||| |||||||||||||||||
Sbjct 125 CTTTCAACGTCGGATCCGCCG-CAAAATCTCCTGTAAACCTCCTCCTCGACCTCGGAACA 183
Query 181 AACCTCACGTGGCTCAACTGCCGCAAACTCAAATCTTTAACATCTCTCCGCCTAGTCACT 240
||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 184 AACCTCACGTGGCTCGACTGCCGCAAACTTAAATCTTTATCATCTCTCCGCCTAGTCACT 243
Query 241 TGCCAGAGCTCCACCTGCAAGTCCATCCCCGGTAATGGCTGCGAC-GGAAAATCCTGTCT 299
|||||||||||||| |||||||| |||||||||||||| |||| | || ||||| |||||
Sbjct 244 TGCCAGAGCTCCACATGCAAGTCTATCCCCGGTAATGGATGCG-CTGGCAAATCTTGTCT 302
Query 300 TTACAAGCAACCAAACCCTCTCGGTCAAAACCCCGTTGTAACAGGCCGTGTCGTCCAAGA 359
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 303 TTACAAGCAACCAAACCCACTCGGACAAAACCCCGTTGTAACCGGCCGTGTCGTCCAAGA 362
Query 360 CAGAGCTTCCATCTCCACCACAGACGGCGGCAAGTTCCTCTCTCAAGTCTCAGTCCCCCG 419
|||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 363 CAGAGCTTCCCTCTACACCACAGACGGCGGCAAGTTCCTCTCTCAAGTCTCCGTCCGCCA 422
Query 420 CTTCACATTCTCCTGCGCCGGCGAGAAAACCCTCGAAGGCCTTCCTCGTCCTGTCGCCGG 479
|||||||||||| |||||||| |||||| ||||| |||||||||||| ||| |||| |||
Sbjct 423 CTTCACATTCTCATGCGCCGGTGAGAAAGCCCTCCAAGGCCTTCCTCCTCCAGTCGACGG 482
Query 480 AGTTCTGGCTCTTTCTCCTGGATCTTCGTCGTTCACGAAACAGGTGACGTCAGCGTTTAA 539
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 AGTTCTGGCTCTTTCTCCCGGATCTTCGTCGTTCACGAAACAAGTGACGTCAGCGTTTAA 542
Query 540 CGTCATCCCTAAATTCTCTCTATGCTTGCCTTCTTCCGGTACCGGGCGTTTTTATATCGC 599
||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||
Sbjct 543 CGTCATCCCTAAATTCTCTCTCTGCTTGCCTTCTTCCGGTACCGGTCATTTCTATATCGC 602
Query 600 CGGCATTCATTACTTTATCCCGCCGTTCAATGA-TAGCAG-TTCTTCGATTCCGATGACT 657
||||||||| ||||||||||| || |||||| | |||| | | | ||||||| | ||||
Sbjct 603 CGGCATTCACTACTTTATCCCACCATTCAAT-AGTAGC-GATAATCCGATTCCAAGGACT 660
Query 658 TTAACTCCCATTAGAGGCACTGACTCAGGAGATTATCTAATC-CTAGTCCTAAA--TATC 714
||||||||||||| |||||||||||||||||||||||||||| || || ||| ||||
Sbjct 661 TTAACTCCCATTAAAGGCACTGACTCAGGAGATTATCTAATCACT-GT--AAAATCTATC 717
Query 715 TACGTTGGTGGAACTCCTTTGAAGTTGAACCCTGATTTGCTAAACGGCGGAGCCAAACTC 774
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 TACGTTGGTGGAACTGCTTTGAAGTTGAACCCTGATTTGCTAACCGGCGGAGCCAAACTC 777
Query 775 AGCACGGTGGTTCACTACACCGTACTTCAAACCGATATTTACAATGCTCTTGCTCAGTCT 834
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 AGTACGGTGGTTCACTACACCGTACTTCAAACCGATATCTACAATGCTCTTGCTCAGTCT 837
Query 835 TTTACACTCGAGGCAAAGACTATGGGAATATTTAAGGTTCCATCGGTGGCGCCGTTCAAA 894
||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 838 TTTACACTCAAGGCTAAGGCTATGGGAATAGCTAAGGTTCCATCGGTGGCGCCGTTTAAA 897
Query 895 CATTGTTTCGATGCGCGCACGGCTGGAAAGAACTTGA---CGGGGCCGAACGTGCCGGTG 951
|||||||| ||| | ||||| ||||||||||| |||| ||||||| |||||||| |||
Sbjct 898 CATTGTTTTGATTCACGCACCGCTGGAAAGAATTTGACGGCGGGGCCTAACGTGCCCGTG 957
Query 952 ATAGAGATTGGTCTGCCGGGGAGGATAGGGGAGTTGAAGTGGGGGTTCTACGGTGCGAAT 1011
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 958 ATAGAGATTGGTCTGCCGGGGAGGATAGGGGAGGTAAAGTGGGGGTTCTACGGTGCGAAT 1017
Query 1012 ACGGTGGTGAAAGTGAAGGAAACGGTGATGTGTTTGGCGTTTATCGACGGTGGAAAGA-A 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 ACGGTGGTGAAAGTGAAGGAAACGGTGATGTGTTTGGCGTTTATCGACGGTGGAAAGACA 1077
Query 1071 GCCGGAGAATTTGATGGTGATTGGGACGCATCAGCTTCAAGATCATATGCTCGAGTTCGA 1130
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 -CCGAAGGATTTGATGGTGATTGGGACACATCAGCTTCAAGATCATATGCTCGAGTTCGA 1136
Query 1131 TTTCAGCGGGACGGTTCTCGCTTTTAGTGAGTCACTCTTGCTCCATAACACAAGCTGCTC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTCAGCGGGACGGTTCTCGCTTTTAGTGAGTCACTCTTGCTCCATAACACAAGCTGCTC 1196
Query 1191 CACTTGGACTTCCAAAAAATAG 1212
||||||| ||||| ||||||||
Sbjct 1197 CACTTGGCCTTCCCAAAAATAG 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5