BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351018
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19160.1 | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 |... 2272 0.0
> AT5G19160.1 | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11
| chr5:6430486-6432728 FORWARD LENGTH=1906
Length=1906
Score = 2272 bits (1230), Expect = 0.0
Identities = 1342/1397 (96%), Gaps = 4/1397 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAAGAACCCATCTCAAGAAGACGACGAAGCCATGCCAATCTCCGAAGTAGTAATA 60
|||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 240 ATGTCGAAGAACCCATCTCAGGAAGAAGATGAAGCCATGCCAATCTCTGAAGTAGTAATA 299
Query 61 AAGAGATTCAAGCGTTTAAGGCTCGTATTCGAGCCGTCACTAGGAGTCTTGGGTTTTTTC 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 300 AAGAGATTCAAGCGTTTAAGGCTCGTGTTCGAGCCATCACTAGGAGTCTTGGGTTTTTTC 359
Query 121 TTGGTGGGTTTGTGTTTAGTCTTCAGCTTCTTCTATCTCGATTACAGAACCGTCGCTAAA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 360 TTGGTGGGTTTGTGTTTAGTCTTCAGCTTCTTCTACCTCGATTACAGAACCGTGGCTAAA 419
Query 181 ACTAAAAGTCATGACTTTTCGGATCAATCGGAGAGATTTCTTTGGCTTAAGGAGCTTGAT 240
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 420 ACTAAAAGTCATGACTTTTCGGATCAATCGGAGAGATTCCTTTGGCTCAAGGAGCTCGAT 479
Query 241 GGGTTTGTAGATAACAACACCAAAGTTGGGTTTCTTGAAGAGAGTGGGAATAGTTGTGAT 300
||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GGGTTTGAAGTTAACAACACCAAAGTTGGGTTTCTTGAAGAGAGTGGGAATGGTTGTGAT 539
Query 301 TTGTTCGATGGGAAATGGGTTTGGGACGAATCGTATCCGTTGTATCAGTCTAAAGATTGC 360
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TTGTTCAATGGGAAATGGGTTTGGGACGAATCGTATCCCTTGTATCAGTCTAAAGATTGT 599
Query 361 ACCTTTCTTGATGAAGGATTCAGATGCACTGAGTTTGGGAGACTTGATTTGTTCTATACT 420
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 ACCTTTATTGATGAAGGATTCAGATGCACTGAGTTTGGGAGACCTGATTTGTTCTATACT 659
Query 421 AAGTGGAGATGGCAACCTAACCATTGTGATTTGCCCAGATTTGATGCCAAGTTGATGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 660 AAGTGGAGATGGCAACCTAACCATTGTGATTTGCCCAGATTTGATGCTAAGTTGATGTTG 719
Query 481 GAGAAGCTAAGGAACAAGCGGCTGGTATTTGTAGGAGACTCAATTGGAAGAAACCAATGG 540
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 720 GAGAAGCTAAGGAACAAGCGGCTAGTGTTTGTAGGAGACTCAATTGGAAGAAACCAATGG 779
Query 541 GAGTCTCTTCTTTGTATGCTAGCTTCTGCAATCAGGAACAAGAATTTGGTTTATGAAGTG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 GAGTCTCTTCTTTGTATGCTAGCTTCTGCAATCAGTAACAAGAATTTGGTTTATGAAGTG 839
Query 601 AACAATAGACCCATCACAAAGCACATGGGCTTCTTTGTGTTCAGGTTTCATGACTACAAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AACAATAGACCCATCACAAAGCACATGGGCTTCTTTGTGTTCAGGTTTCATGACTACAAT 899
Query 661 TGCACTGTTGAATACTATAGAGCACCGTTTTTGGTTCTCCAAAGCCGTCCACCTAG-TGG 719
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct 900 TGCACTGTTGAATACTATAGAGCACCGTTTTTGGTTCTTCAAAGCCGGCCACCT-GAAGG 958
Query 720 ATCACCAGAAAAGGTAAAGACGACACTTAAACTAGAGACGATGGAATGGACTGCCGACAA 779
||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||
Sbjct 959 ATCACCAGAGAAGGTAAAGACCACTCTTAAGCTAGAGACGATGGAATGGACTGCTGATAA 1018
Query 780 GTGGAGAGATGCGGATATATTAGTGTTTAACACAGGACATTGGTGGAACTACGAGAAAAC 839
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1019 GTGGAGAGATGCGGATATATTAGTGTTTAACACGGGTCATTGGTGGAACTATGAGAAAAC 1078
Query 840 TATTCGCGGAGGTTGTTACTTTCAAGAAGGAGAAAAAGTGCA-AATGAGAATGAAGATAG 898
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1079 TATTCGCGGAGGTTGTTACTTTCAAGAAGGAGAAAAAGT-AAGAATGAGAATGAAGATAG 1137
Query 899 AGCATGCGTATAGACGAGCTATGAAGACCGTTATGAAATGGATACAAGAAGAGGTTGATG 958
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1138 AGCATGCGTATAGACGAGCTATGAAGACTGTAATGAAATGGATACAAGAAGAGGTTGATG 1197
Query 959 CAAACAAGACACAGGTCTTCTTCCGCACATTTGCCCCTGTGCATTTCAGGGGAGGAGATT 1018
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1198 CAAACAAGACACAGGTTTTCTTTCGGACATTTGCCCCTGTGCATTTCAGGGGAGGAGATT 1257
Query 1019 GGAGAACCGGAGGAACATGTCATATGGAGACACTGCCTGATTTTGGAGCCTCTCTGGTTC 1078
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 GGAGAACTGGAGGAACATGTCATATGGAGACACTGCCTGATTTTGGAGCTTCTCTGGTTC 1317
Query 1079 CAGCAGAGACATGGGATCATATAAAGCTCCTTCAAGATGTCTTGTCATCGTCTCTTTACT 1138
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 CAGCAGAGACATGGGATCATATAAAGCTCCTTCAAGATGTCTTGTCTTCGTCTCTTTACT 1377
Query 1139 ACTTGAAAACATCAGAGACGGTTGAACTGAAAGTGTTGAACATAACAGCCATGGCTGCTC 1198
||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACTCGAACATATCAGAGACGGTTAAACTGAAAGTGTTGAACATAACAGCCATGGCTGCTC 1437
Query 1199 AAAGAAACGATGGTCACCCATCACTGTACTACTTGGGCTTGGCTGGTCCTGCGCCATTCC 1258
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 AAAGAAACGATGGTCACCCATCACTGTACTACCTGGGCTTGGCTGGTCCTGCGCCATTCC 1497
Query 1259 ACAGGCAAGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAATGAGCTTC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ACAGGCAAGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAATGAGCTTC 1557
Query 1319 TTTATGCATTGTTTCTAAAGCATGAAGGCTATTCAAGTCCAATATCAAACAATAGCGATA 1378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1558 TTTATGCATTGTTTCTAAAGCATGAAGGCTATTCAAGTCCAAGATCAAACAATAGCGATA 1617
Query 1379 CAGACAACTTTACATAA 1395
|||||||||||||||||
Sbjct 1618 CAGACAACTTTACATAA 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5