BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351064
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19640.1 | Symbols: | Major facilitator superfamily protein... 2881 0.0
> AT5G19640.1 | Symbols: | Major facilitator superfamily protein
| chr5:6636460-6638590 FORWARD LENGTH=1830
Length=1830
Score = 2881 bits (1560), Expect = 0.0
Identities = 1742/1832 (95%), Gaps = 4/1832 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGCTATGGATCCGAGAGATAATGGCTACGTTACTCCGCTGAATGAGCGGGAGAGA 60
||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||
Sbjct 1 ATGGCCGCTATGGATCCGAGAAATAATGGCAACGTTGCTCCGCTAAATGAGCGGGAGAGA 60
Query 61 GCAGAAAATTTGGAAGTTGGTGAAGTGGTAGAGGTTCAAGATGATCAAAGTGTGGTGTCA 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAGAAAATTTGGAAGTTCGTGAAGTGGTAGAGGTTCAAGATGATCAAAGTGTGGTGTCT 120
Query 121 CTTATGTCCAATGATTCTGATCTTCagaaaaagatgatgaagaaagaagagaagaagaag 180
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 121 CTTATGTCCAACGATTCTGACCTTCAGAAAAAGATGATGAAGAAAGAGGAGAAGAAGAAT 180
Query 181 GGTGGCTGGACAAACGCAATCATTTTGCTAGTAAATCAAGGGTTAGCGACTTTGGCCTTC 240
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GGTGGCTGGACAAACGCAATCATTTTGCTAGTAAATCAAGGGTTAGCTACATTGGCCTTC 240
Query 241 TTTGGTGTGGGAGTAAACTTGGTGCTGTTCCTAACACGTGTTATGGGACAAGGTAATGCA 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGGTGTGGGAGTAAACTTGGTGTTGTTCCTAACACGTGTTATGGGACAAGGTAATGCA 300
Query 301 GAGGCTGCTAACAACGTAAGCAAGTGGACCGGAACAGTTTACATGTTTTCTCTCG-TGGG 359
|| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 301 GAAGCTGCGAACAATGTAAGCAAGTGGACAGGAACAGTTTACATGTTCTCTCTCGTTGGG 360
Query 360 AGCATTTCTTAGCGACTCTTATTGGGGTCGTTACTTGACTTGCACGATATTCCAAGTCAT 419
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 -GCATTTCTTAGTGACTCCTATTGGGGTCGTTACTTGACTTGCACGATATTCCAAGTCAT 419
Query 420 TTTCGTTATCGGTGTTGGCCTACTCTCTTTTGTTTCTTGGTTTTTCTTGATCAAACCTCG 479
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 420 CTTCGTTATCGGTGTTGGCCTCCTCTCTTTTGTCTCTTGGTTTTTCTTGATTAAACCTCG 479
Query 480 AGGTTGTGGCGATGGGAACCTTGAATGCAACACTCCCTCTTCCCTCGGAGTTGCTATCTT 539
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AGGATGTGGCGATGGGGACCTTGAATGCAACCCTCCCTCTTCCCTCGGAGTTGCTATCTT 539
Query 540 TTATTTATCTGTTTATCTGGTAGCCTTTGGATACGGAGGCCATCAACCAACGCTGGCTAC 599
|||| ||||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 540 TTATCTATCTGTATATTTGGTAGCTTTTGGATACGGAGGCCACCAGCCAACGCTGGCTAC 599
Query 600 TTTCGGTGCAGACCAGCTTGATGATGATAAAAACTCCAAAGCTGCCTTTTTCAGCTACTT 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TTTCGGTGCAGACCAGCTTGATGATGATAAAAACTCCAAAGCTGCGTTTTTCAGCTACTT 659
Query 660 CTACTTTGCCCTCAACGTTGGAGCTCTCTTTTCAAACACAATCCTTGTTTATTTTGAGGA 719
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTACTTTGCTCTCAACGTGGGAGCTCTCTTTTCAAACACAATCCTTGTTTATTTTGAGGA 719
Query 720 TAAAGGGTTGTGGACTGAAGGTTTCTTGGTGTCACTAGGCTCAGCTATTGTCGCATTGGT 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TAAAGGGTTGTGGACTGAAGGTTTCTTGGTGTCACTAGGCTCCGCTATTGTCGCATTGGT 779
Query 780 GGCCTTTCTGGCCCCAACAA-AGCAATATCGTTATGTCAAGCCATGTGGGAACCCTTTGC 838
||| ||| |||||||||||| | |||||||||||||||||||| ||||| ||||| ||||
Sbjct 780 GGCTTTTTTGGCCCCAACAAGA-CAATATCGTTATGTCAAGCCGTGTGGTAACCCGTTGC 838
Query 839 CTCGTGTGGCGCAAGTATTCGTGGCCACTGCTCGGAAGTGGAGTGTTGATCGACCAGGAG 898
||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct 839 CTCGTGTGGCGCAAGTATTTGTGGCCACTGCTCGTAAGTGGAGTGTTGTTCGACCAGGAG 898
Query 899 ATCCGCATGAGTTGTACGAACTTGAAGGTCCTGAATCCGCTATTAAAGGAAGTCGAAAGA 958
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 ATCCGCATGAGTTGTACGAACTTGAAGGTCCTGAATCCGCCATTAAAGGAAGTCGAAAGA 958
Query 959 TATTTCACAGTACCAAATTTGTCTTCTTGGATAGAGCAGCAGTGATTACAGAGAATGATA 1018
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 TATTTCATAGTACCAAATTTCTCTTCTTGGATAGAGCAGCAGTGATTACAGAGAATGATA 1018
Query 1019 GGGACGAAACAAGGACCAATGCATGGAGGTTGTGTAGTGTAACTCAAGTAGAGGAGGCAA 1078
|| | | ||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 GGAATGGGACAAGGAGCAATGCATGGAGGTTGTGCAGTGTAACTCAAGTAGAGGAGGCAA 1078
Query 1079 AATGTGTGATGAAGTTGCTTCCAATATGGCTCTGCACTATAATATACTCAGTGATCTTCA 1138
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1079 AATGTGTGATGAAGTTGCTTCCAATATGGCTATGCACTATAATCTACTCAGTGATCTTCA 1138
Query 1139 CACAAATGGCGTCTTTGTTTGTGGAGCAAGGCGATGTGATGAATGCATACGTAGGTAAAT 1198
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1139 CACAAATGGCGTCATTGTTTGTGGAGCAAGGTGATGTGATGAATGCATACGTAGGGAAAT 1198
Query 1199 TCCACATCCCAGCAGCGAGCATGTCGGTCTTTGACATAATCAGCGTCTTTGTATCAACGG 1258
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct 1199 TCCACATCCCCGCAGCGAGCATGTCGGTCTTCGACATATTCAGCGTCTTTGTATCAACAG 1258
Query 1259 GAATCTACCGCCACATCATATTTCCTTACGTGAGACCCACGGAGCTTATGCGGATGGGTA 1318
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1259 GAATCTACCGCCACATCATATTTCCATACGTGAGACCCACGGAACTTATGCGGATGGGGA 1318
Query 1319 TAGGGCTGATCATAGGGATAATGGCAATGGTAGCTGCAGGATTAACAGAGATCCAACGGC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGGGCTGATCATAGGGATAATGGCAATGGTAGCTGCAGGATTAACAGAGATCCAACGGC 1378
Query 1379 TGAGACGAGTAGTCCCGGGGCAAAAGGAGAGTGAGCTCACCATTTTATGGCAAATTCCGC 1438
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 TGAAACGAGTAGTCCCGGGGCAAAAGGAGAGTGAGCTCACCATTTTATGGCAAATTCCAC 1438
Query 1439 AGTACGTGCTTGTGGGAGCAAGTGAGGTGTTTATGTATGTTGGGCAGTTAGAGTTCTTCA 1498
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1439 AGTACGTGCTTGTGGGAGCAAGTGAGGTGTTCATGTACGTTGGACAGTTAGAGTTCTTCA 1498
Query 1499 ACGGACAAGCACCAGACGGGTTAAAGAACTTAGGAAGCTCGTTGTGTATGGCTTCGATGG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACGGACAAGCACCAGACGGGTTAAAGAACTTAGGAAGCTCGTTGTGTATGGCTTCGATGG 1558
Query 1559 CATTAGGTAACTACGTGAGCAGTTTGATGGTTAATATTGTTATGGCCATCACCAAAAGAG 1618
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1559 CTTTAGGTAACTACGTGAGCAGTTTGATGGTTAATATTGTTATGGCCATAACCAAAAGAG 1618
Query 1619 GTGAGAATAACCCCGGGTGGATACCGGAAAATCTCAACGAAGGTCATATGGATCGGTTTT 1678
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GTGAGAATAGCCCCGGGTGGATACCGGAAAATCTCAACGAAGGTCATATGGATCGGTTTT 1678
Query 1679 ACTTTCTGATTGCTGCATTAGCTGCTATCGATTTCGTGGTTTATTTGGTCTTTGCAAAGT 1738
| ||||||||||| || ||||| ||||||||||| |||||||||||| | ||||||||||
Sbjct 1679 ATTTTCTGATTGCCGCGTTAGCAGCTATCGATTTTGTGGTTTATTTGATATTTGCAAAGT 1738
Query 1739 GGTACCAACCCATAAGCCATGATGAAGATAGCATCAAGGGCGGTTCTTGTGGTAATCTGA 1798
|||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 1739 GGTACCAACCCATAAGTCATGATGAAGATAGTATCAAGGGCGGTTCTGGTGGTAGTCTGA 1798
Query 1799 AGAAGACTGTTTCTGAGTTGGAACAAGTTTGA 1830
||||||| ||||||||||||||||||||||||
Sbjct 1799 AGAAGACCGTTTCTGAGTTGGAACAAGTTTGA 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90561783180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5