BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351105

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20100.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   525    2e-148


> AT5G20100.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G80180.1); 
Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6790056-6790725 
FORWARD LENGTH=670
Length=670

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 318/335 (95%), Gaps = 0/335 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTTACAGAGATCAACGGCGTCTTTTAGGAGACAAGGATCGTCAGGACTCATCTGG  60
            |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  98   ATGGCGTTGCAGAGATCAACAGCGTCGTTTAGGAGACAAGGATCGTCAGGACTCATCTGG  157

Query  61   AACGACAGGTTCTTGAGCGGAGAAATTCGCAATGACGAAAGACAAGAAGACCGGTGCAAC  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  158  AACGACAGGTTCTTGAGCGGAGAAATTCGCAACGACGAAAGACAAGAAGACCGGTGCAAC  217

Query  121  GATCATCGTGACGGATCAATGGCGGCTACGGCGGCGACAGTGAAACGTAGCGCATCAGAC  180
            ||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct  218  GATCATCGTGACGGATCAATGGCTGCTACGACTGCAACAGTGAAACGTAGCGCATCAGAC  277

Query  181  GGAGGATGTGGCCATGGTGGAATATTGGGGGAGATATCTCCAGCGTTGGATCCACCTTCT  240
            |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| 
Sbjct  278  GGAGGATGTGGCCATGGTGGAAGATTGGGGGAGCTATCTCCAGCGTTGGATCCACCTTCA  337

Query  241  CCTAAAATATCTTCCGTTGGTTGTGGCTTTTGTTCTCTGTTTTCGTCTGATAGGAGAAGA  300
            |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| ||||
Sbjct  338  CCTAAAATATCTGCCGTTGGTTGTGGCTTTTGTTCTTTGTTTTCGTCTAATGGGAAAAGA  397

Query  301  AGAAGCAGAGGAAGGAGAAGATCAAGCGGTGGAAG  335
            ||||||||||| |||||||||||||||||||||||
Sbjct  398  AGAAGCAGAGGCAGGAGAAGATCAAGCGGTGGAAG  432


 Score =  231 bits (125),  Expect = 4e-60
 Identities = 148/158 (94%), Gaps = 6/158 (4%)
 Strand=Plus/Plus

Query  335  GATTTGATTATGTTCTTCTCTCTT-ATGTGAAAAATTTCGAAACCTTGATGGATAAAGC-  392
            |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| 
Sbjct  498  GATTTGATTATGTTCTTCTCTCTTTATGT-AAAAATTTCGAAATCTTGATGGATAAAGCC  556

Query  393  TAAGGA-TGGCTTTTGGTTTCAAGAGAAGGCTTATT-ATAGATTGATCCTTACAAAAATG  450
            || ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  557  TA-GGAATGGCTTTTGGTTTCAAGAGAAGGCTTATTTATAGATTGATCCTTACGAAAATG  615

Query  451  TGTTTGTTTGTGTGTTCTCATCGATTTATCAATCAAGT  488
            ||||||||||| |||| |||||||||||||||||||||
Sbjct  616  TGTTTGTTTGTTTGTTTTCATCGATTTATCAATCAAGT  653



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5