BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351109
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20140.2 | Symbols: | SOUL heme-binding family protein | ch... 1541 0.0
> AT5G20140.2 | Symbols: | SOUL heme-binding family protein |
chr5:6798923-6800977 REVERSE LENGTH=1416
Length=1416
Score = 1541 bits (834), Expect = 0.0
Identities = 1019/1106 (92%), Gaps = 22/1106 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACCGTTGGTCAGCAGCATCTCTACCGGCCAATACTCACCGCCGTCGGAAGTGAT 60
|||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 86 ATGGCTACCGTTAATCAGCAGC-T-T-TACCGGCCAATACTCACCGCCGTCGGAAGTGAC 142
Query 61 TGCCGGAGGC-TCGTAACCACCCGTTTCCTCCCTGTTCCAAGGCGCAATTTTAA-CTCCC 118
|||||| ||| | |||||||||||||||||||||||||| || ||||| ||| | | |
Sbjct 143 TGCCGGCGGCAT-GTAACCACCCGTTTCCTCCCTGTTCCGAGACGCAA-CGTAACCACTC 200
Query 119 GGCTGCGG-CAGATATTGAGTCTTGAGGTTGGCAAGGAAGTGGCTCCGGCATCGTCGACG 177
| || ||| || || |||||||||||||| ||||||||||||||| | ||| |||||||
Sbjct 201 GTCTACGGCCA-ATTTTGAGTCTTGAGGTGGGCAAGGAAGTGGCTTCAGCACCGTCGACA 259
Query 178 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACAAAGATCTTCCTCACCTCTTT-GACGA 236
||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||
Sbjct 260 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACGAGGATCTTCCTCACCT-TTTCGACGA 318
Query 237 CCAAGGAATCGATAAAACGGCGTACGATGAGCGGGTGAAGTTCAGAGATCCAATCACTAA 296
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 319 CCAAGGAATCGATAAAACGGCGTACGATGAGCGCGTGAAGTTCAGAGACCCAATCACTAA 378
Query 297 GCACGACACCATCTCCGGTTATCTCTTCAACATTTCTCTT-CTCAAGAATATCTTCACTC 355
||||||||||||||| || ||||||||||||||| || || |||||||||||||||||||
Sbjct 379 GCACGACACCATCTCTGGCTATCTCTTCAACATTGCT-TTCCTCAAGAATATCTTCACTC 437
Query 356 CTCGA-TTTCAACTTCACTGGGCTAAACAGACAGGTCCATATGAGATAACTACAAGATGG 414
||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 438 CTC-AGTTTCAGCTTCACTGGGCTAAACAGACAGGTCCATATGAGATCACTACGAGATGG 496
Query 415 ACAATGGTGATGAAGTTTATGCTTTTACCATGGAAACCAGAGCTTGTCTTCACTGGTA-C 473
||||||||||||||||| || | |||||||||||||||||| |||||||||||||| |
Sbjct 497 ACAATGGTGATGAAGTTCATACCTTTACCATGGAAACCAGAACTTGTCTTCACTGG-ATT 555
Query 474 ATCAATCATGGAAGTTAATCCTGAAACTAAGAAATTTTGCAGCCATCTGGACTTGTGGGA 533
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 556 ATCAATCATGGAAGTTAATCCTGAAACTAACAAATTTTGTAGTCATCTGGACTTGTGGGA 615
Query 534 TTCTATCAAGAACAACGACTACTTTTCTCTGGAAGGTCTTGTTGATGTATTTAAGCAGTT 593
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 616 TTCTATCAAGAACAATGACTACTTTTCTCTTGAAGGTCTTGTTGATGTTTTTAAGCAGTT 675
Query 594 ACGGATATATAAAACGCCAGATTTGGAAACTCCAAAGTATGAAATACTGAAAAGAACAGC 653
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 676 ACGGATATATAAAACGCCAGACTTGGAAACTCCAAAGTATCAAATACTGAAAAGAACAGC 735
Query 654 AAACTATGAGGTCAGAAGGTATGAACCCTTCATAGTGGTGGAGACAAACGGTGACAAGCT 713
|||||||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct 736 AAACTATGAGGTTAGAAACTATGAGCCCTTCATTGTGGTGGAGACAATTGGTGACAAGCT 795
Query 714 TTCAGGCTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGGCAAA-AACTCGACGA 772
||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 796 TTCTGGTTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGG-AAAGAACTCGACCA 854
Query 773 TGGAGAAAATACCAATGACAACCCCAGTGTTTACCCAAACAACAGATACTGATCAACTCT 832
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 855 TGGAGAAAATACCAATGACAACTCCAGTGTTTACTCAAACAACAGATAC---TCAACTCT 911
Query 833 CTTCTGACGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTCAGCAGCTTACCGA 892
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 912 CTTCTGATGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTTAGCAGCTTACCAA 971
Query 893 TGCCTAATGAAGAAAAGGTAAACTTGAAGAAGTTGGAAGGCGGATTTGCTGCAGCAGTGA 952
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 972 TGCCTAATGAAGAAAAGGTAAATTTGAAGAAGTTGGAAGGCGGTTTTGCTGCAGCAGTGA 1031
Query 953 AATTCAGTGGGAAACCGACAGAGGAGGTTGTCCGCGCAAAAGAGAATGGTCTGAGGAGCA 1012
|||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct 1032 AATTCAGTGGTAAACCGACAGAGGATGTTGTCCAAGCAAAAGAGAATGAACTGAGGAGCA 1091
Query 1013 GTCTGAGTAAAGATGGTCTTAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1072
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GTCTGAGTAAAGATGGTCTGAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1151
Query 1073 CAGGACGAACATGGAACTTCATAATG 1098
||||||||||||||||||||||||||
Sbjct 1152 CAGGACGAACATGGAACTTCATAATG 1177
Score = 86.1 bits (46), Expect = 7e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1098 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1143
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5