BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351112
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20170.1 | Symbols: | RNA polymerase II transcription media... 3088 0.0
> AT5G20170.1 | Symbols: | RNA polymerase II transcription mediators
| chr5:6807481-6810798 REVERSE LENGTH=2104
Length=2104
Score = 3088 bits (1672), Expect = 0.0
Identities = 1864/1957 (95%), Gaps = 12/1957 (1%)
Strand=Plus/Plus
Query 1 ATGGATAGCGACATGGAAATCTCTCTCGACAGGCTTCCCATAAAACGATTGGAATCTATT 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 70 ATGGATAGCGACATGGAAATCTCTCTCGACAGGCTTCCCATTAAACGATTGGAATCTATC 129
Query 61 GAGGAAAATGGCGCCGAGCGTTTTCCGTCTGATGTTGGTTACGATGATAAGAGAGTATCG 120
|| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 130 GAAGAAAATGGCGCCGAGCGTTTTCCTTCTGATGTTGATTACGATGATAAGAGAGTATCG 189
Query 121 CTGATTCGGAGGATAGACTTCGCGTGGGCATTGgaagaggaagatgagctgaagaagaag 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 190 CTGATTCGGAGAATAGACTTCGCGTGGGCGTTGGAAGAGGAAGATGAGCTGAAGAAGAAG 249
Query 181 aagcagaagaagaGCTCCAAGGATAGCGCGGAGCAATGGAAATGGAAGGGAATGGTTGAG 240
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 250 AAGCAGAAGAAAAGCTCCAAGGATAGCGTGGAGCAATGGAAATGGAAGGGAATGGTTGAG 309
Query 241 AATTTGCAATTGGCTCATCAGGAGCTCTCTGTTATCATAGACCTTATCGACACTGTCCAA 300
||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||
Sbjct 310 AATTTGCAATTGGCTCATCAGGAGCTCACTGTCATCATTGACCTTATCGACACAGTCCAA 369
Query 301 GCAAATGATGCAGTAACAGTTGCTGGGATGACCAGACCTAAGCCGATGCCGAATGAGATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GCAAATGATGCAGTAACAGTTGCTGGGATGACCAGACCTAAGCCGATGCCGAATGAGATT 429
Query 361 CTCTCGGATCTTGCTGTGTCTACTGCTACCAAGTTGCAGGGCTACCGGAATTTAGGAAAC 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 430 CTCTCGGATCTTGCTGTGTCTACTGCTACCAAGCTGCAGGGCTACCGGAATTTAGGAAAC 489
Query 421 TACTTTAAACAATCAGCAAAAGCTTTAGAGCAGAAAATCAACCGCGAAGCAAGGTTTTAT 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 490 TACTTTAAACAATCAGCAAAAGCTTTAGAGCAGAAAATCAATCGTGAAGCAAGGTTTTAT 549
Query 481 GGCGCTCTGATCAGGTTGCAGCGGAACTGGAAAGTTAAGCGACAGCGCATGCTTGCTTCA 540
|| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 550 GGTGCTCTTATCAGGTTGCAGCGGAACTGGAAAGTCAAGCGACAACGCATGCTTGCTTCA 609
Query 541 AATGCCAGCAATGAGGGCTTCACCATTGATCTTTCTGACAGTTCATTACATGATCCGACT 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 AATGCCAGCAATGAGGGCTTCACCATTGATCTTTCTGACAGTTCATTATATGATCCGACT 669
Query 601 TCTGGTTTTCGCCCATCTACACTGCCCACTATTCGTGTAGATCATGATTCAGCTGGTATG 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 670 TCTGGTTTTCGCCCATCTACACTGTCCACTATTCGTGTAGATCATGATTCAGCTGGTATG 729
Query 661 CTGGCCATTAATTTACCCCAAGATTCATGGTACTCTCTTCGGTTTGGGTTTGTTGGCTTA 720
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 730 CTGGCCATTAATGTACCCCAAGATTCATGGTACTCTCTTCGGTTTGGGTATGTTGGCTTA 789
Query 721 AATCCGATTGACAACACAAACGAGTCTGGTGAGCACCTAGACTCCACTA-TGGGCCACGA 779
|||||||||| |||| ||||||| |||| ||||||| ||||||| |||| ||| | ||||
Sbjct 790 AATCCGATTGGCAACTCAAACGAATCTGATGAGCACATAGACTCGACTACTGGTC-ACGA 848
Query 780 TATCCCTGGAACATCAGAGAAGCAGTCTGCAAGTGACGACGAATATGTTAAAGAAACTCA 839
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 849 TATCCCTGGAACATCAGAGAAGTTGTCTGCAAGTGACGACAAATATGTTAAAGAAACTCA 908
Query 840 TTCACTACTGAGGGAGGTGCATAAATCAATTTTTGCTGAGCAGGTGTTGTTTGACATGGT 899
||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
Sbjct 909 TTCGCTACTGAGGGAGGTGCATAAATCAATTTTTGCTGAGCAG-T-T-GTTTGACATGCT 965
Query 900 AAATCGTGAAGCATTCAATGAAGGTGTGGGATTCAACATTAGTGGAGTACGAGAAAATTT 959
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 966 AAATCGTGAAGCATTCAATGAAGGTGTGGGATTCAACATAAGTGGACTACGAGAAAATTT 1025
Query 960 TATGGAAATGAGCATCGGCCAAGGAGCTTCTTTGTTTGTATCTCTCAACCCATCAGGCAA 1019
||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 1026 TATGGAAATGAGCATCGGCCAAGGAGCTTCTCTGTTTGTGTCTCTCCACCCATCAGGCAA 1085
Query 1020 GAATGCCAGCATCAAGAAGTCGGAATCTGCAATCTTGCTCATTGAATCTTCTGGCAGAAT 1079
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 1086 AAATCCCAGCATCAAGAAGTCGGAATCTGCAACCTTGCTCATTGAATCATCTGGCAGAGT 1145
Query 1080 AGAACCAGCAGAAGGAG-A--CTATCGCTTGAAGAAGCTAGGGTTCCCTAATCGCGCCAG 1136
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1146 AGAACCAGCAGAAGGAGGAGACTATCGCTTGAAGAAGCTAGGGTTCCCTAATCGCACCAG 1205
Query 1137 CTATGAAATATACTTGCAACAAATTTTTCATGAGCATGCCTTTGGAAAAGCTAAAGATCA 1196
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1206 CTATGAAATATACTTGCAACAAATTTTTCACGAGCATGCCTTTGGAAAAGCTAAAGATCA 1265
Query 1197 GGC-CAAGTCAAAAAGTATCCGAGCATCCAATCAAACAAGAAA-GGACAGCAACTCTGGA 1254
| | |||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||
Sbjct 1266 G-CTCAAGTCAAAAAGTATCAGAGCATCCAATCAAACA-GAAAAGGACAGCAACTCCGGA 1323
Query 1255 CTTCTTGATCATTTCTGCTTATCTTTGACTCATAGAATCTTCTCAAATAGAGTGCTTGTG 1314
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1324 CTTCTTGACCATTTCTGCTTATCTTTGACTCATAGAATCTTCTCAAATAGAGTTCTTGTG 1383
Query 1315 CATCTGGAAAGCGTGGTCTGCAAGGTCCCATATCTTCATTTGATATCTCATCCTACATGG 1374
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1384 CATCTTGAAAGCGTGGTCTGCAAGGTCCCGTATCTTCATCTGATATCTCATCCTACATGG 1443
Query 1375 AATTCTCGGACATCGTCATGGACTGTCTTCATGACTGTTCCTCCATCAATCATCCCCCAA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AATTCTCGGACATCGTCATGGACTGTCTTCATGACTGTTCCTCCATCAATCATCCCCCAA 1503
Query 1435 GGAAGTTCTGAAACCCAGTCTCCAGATGGTAAGAGGAATGTGAAGACGCAGTTCCGGACA 1494
||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1504 GGAAGGTCTGAAACCCAGTCTCCTGATGGTAAGAGGAATCTTAAGACGCAGTTCCGGACA 1563
Query 1495 AAAGTGGTGGTGAAGGATGAGTGTATTAGTGTTGAAGCCGAATGCACGCCCAATGTGGTT 1554
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1564 AAAGTGGTGGTGAAGGATGATTGTATTAGTGTTGAAGCGGAATGCACGCCCAATGTGGTT 1623
Query 1555 GGCTTACTCAAAAGCAGCTCCTGCAATTTATTCGCTATGAACAAATATGAGTGCGGCGTG 1614
||||||||||||||||| ||||||||| ||||| |||| |||||||| ||||||| ||||
Sbjct 1624 GGCTTACTCAAAAGCAGTTCCTGCAATCTATTCTCTATAAACAAATACGAGTGCGACGTG 1683
Query 1615 GCCGACCTTCCCGTGATAATTCTCCAACAGGTGGCAAGCCAGATAGTGTGTTGGCTACTG 1674
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1684 GCCGACCTTCCCGTGATGATTCTCCAACAGGTGGCGAGCCAGATAGTGTGTTGGCTACTG 1743
Query 1675 GAGGAAGCACGTACAGTAGGTATAAAAGCGAGCCGGGATTTTCTGTCGCTATCATTAGAG 1734
||||||||||| || ||||| | |||||||||| |||| |||||||| ||||| ||||||
Sbjct 1744 GAGGAAGCACGGACGGTAGGGACAAAAGCGAGCAGGGAATTTCTGTCACTATCGTTAGAG 1803
Query 1735 ATAGTGGAAGGGGAGAGAGTGAGCCTGGTGGCGCAAGTAAACCCGGAAGACGCAAAGGGA 1794
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1804 ATAGTGGAAGGGGAGAGAGTGAGCCTGGTGGCGCATGTAAACCCGGAAGACGCAAAAGGA 1863
Query 1795 TGCATATCGTGGTGGCTAGTGATGGAGAATGGATGCACAGAGGAGAGGGAAGGAGTGTCG 1854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 TGCATCTCGTGGTGGCTAGTGATGGAGAATGGATGCACAGAGGAGAGGGAAGGAGTGTCG 1923
Query 1855 GAGAGTAGGAAGTTGTTGGGTCATTTGTCTCTCGATGTCTTGTACTCTGTTCTCATGGAT 1914
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1924 GAGAGTAGGAAGTTGTTGGGTCATTTGTCTCTGGATGTCTTGTACTCTGTTCTCATGGAT 1983
Query 1915 TTGATCAACTTGTGTGGTACTGGTCGCAATGCTTTAG 1951
|||||||||||||||||||||||||||||||||||||
Sbjct 1984 TTGATCAACTTGTGTGGTACTGGTCGCAATGCTTTAG 2020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5