BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351139
Length=3783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:6... 5786 0.0
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | ... 1995 0.0
> AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:6899015-6904167
REVERSE LENGTH=3914
Length=3914
Score = 5786 bits (3133), Expect = 0.0
Identities = 3579/3796 (94%), Gaps = 23/3796 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAGAGAGGTTTCTACAATTTGAAGCATCCATTTGATCCATGCCCTTTTGAGTTC 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 129 ATGAAGAAAAGAGGTTTCTACAATTTGAAGCATCCATTTGATCCATGTCCTTTCGAGTTC 188
Query 61 TTCTGCTCGGGTACATGGAAGCCTGTGGAATACATGAGGATCGAAGATGGAATGATGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTCTGCTCGGGTACATGGAAGCCTGTGGAATACATGAGGATCGAAGATGGAATGATGACA 248
Query 121 ATACGTCTGTTACAGAACGGTTATGTGTTGGAGGATATCCGTCCCTTCCAAAGGCTTCGT 180
|||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 249 ATACGTCTGTTAGAGAATGGTTATGTGTTGGAAGATATCCGTCCTTTCCAAAGGCTTCGT 308
Query 181 CTCAGATCAAGAAAAGCGGCTTTGAGTGACTGTATCTGTTTCCTTCGCCCTGATATCGAT 240
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 309 CTCAGATCAAGAAAAGCGGCTTTGAGCGACTGTATCTGTTTCCTTCGGCCTGATATCGAT 368
Query 241 GTCTGTGTTCTCTATCGTCTCCATGAGGATGACTTGGAACCGGTTTGGGTCGATGCGAGG 300
|| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 369 GTTTGTGTTCTCTATCGTATCCACGAGGATGACTTGGAACCGGTTTGGGTGGATGCGAGG 428
Query 301 ATTGTTTCTATAGAGAGGAAGCCTCATGATTCTGAATGCTCTTGCAAGATCAGTGTTAGA 360
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 429 ATTGTTTCTATAGAGAGGAAGCCTCATGAGTCTGAATGCTCTTGCAAGATCAATGTTAGA 488
Query 361 ATTTACATTGACCAAGGCTGCATTGGGTCGGAGAAACAGAGAATCAATAAAGATGCCGTG 420
|||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 489 ATTTACATTGACCAAGGCTGCATTGGCTCGGAGAAACAGAGAATCAATAGAGATTCCGTG 548
Query 421 CTTATCGGTCTAAACCAAATCTCTATTCTCCAGAAGTTCTACAAGGAACAAAGTACTGAT 480
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 549 GTTATCGGTCTAAACCAAATCTCCATTCTCCAAAAGTTTTACAAGGAACAAAGTACTGAT 608
Query 481 CAGTTTTACAGGTGGAAATTCTCTGAGGACTGCACTTCCTTGATGAAAACGAGACTGTCG 540
||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 609 CAGTTCTACAGATGGAGATTCTCTGAGGACTGCACTTCCTTGATGAAAACAAGACTGTCT 668
Query 541 TTGGGAAAGTTCTTGCCGGATCTTTCGTGGTTGACTGTTACTTCAA-TTCTGAAAAGCAT 599
||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 669 TTGGGAAAGTTCTTGCCGGATCTTTCGTGGTTGACTGTTACCTCAACTT-TGAAAAGCAT 727
Query 600 TGTGTTTCACATAAGAACAGTGCAAACCAAGATGATTTATCAGATTGTAGCAGAT---GA 656
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 728 TGTGTTTCAAATAAGAACAGTGCAAACCAAGATGGTTTATCAGATTGTAACAGATGAAGA 787
Query 657 AGGCTCTAGCTGTACGTTGAGTTCGATGAATATAACTGTGGAAGACGGTGTTTCGTTATC 716
|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 788 AGGCTCTAGCAGTACGTTGAGTTCGATGAATATTACTTTGGAAGACGGTGTTTCGTTATC 847
Query 717 AAAAGTTGTTCAGTTTAATCCTGCAGATATATTGGATGATTCTCAAGATCCTGAAATAAA 776
|||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 848 AAAAGTGGTTAAGTTTAATCCGGCAGATATATTGGATGATTCTCAAGATCTTGAAATAAA 907
Query 777 GCAAGAAACCGATTATTTTCAAGAAGCAGATGAGGTAGTGGAACTACGTCGGTCCAAAAG 836
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 908 GCAAGAAACCGATTATTATCAAGAAGAAGATGAGGTAGTGGAACTACGTAGGTCCAAAAG 967
Query 837 AAGAAATGTGAGACCGGATAGATTTACCGGATGTGATTATCAGTTAGATACAAATGACGG 896
|||||| ||||||||||||| | ||||||||||||||| || |||||||| ||||||
Sbjct 968 AAGAAACGTGAGACCGGATATCTACACCGGATGTGATTATGAGCCAGATACAATTGACGG 1027
Query 897 GTGGGTGCGGATGATGCCGTACCAGATTGGAAAATGGGCTGTTAGTGTGGAGAGTGATGA 956
|||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||||
Sbjct 1028 TTGGGTGCGGATGATGCCGTACCAGTTTGGAAAATGTGCTGTTAATGTTGAGAGTGATGA 1087
Query 957 CGACGAGGACGATAGCAATGATGCTGGTGATACTAATGATGATATGTATGTACCATTATC 1016
||||||||||||| |||||| | ||||||||||||||||||| ||||| ||||||||||
Sbjct 1088 AGACGAGGACGATAACAATGAGGATGGTGATACTAATGATGATTTGTATATACCATTATC 1147
Query 1017 GCATTTATTCATCAAGAAAAAGATAACTAATTCTCGAGAAGCGATACCGAAAAGTATG-A 1075
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||| | |
Sbjct 1148 GCGTTTATTCATCAAGAAAAAGAAAACTAATTCTCGAGAAGCGAAACCGAAAAGT-CGAA 1206
Query 1076 AAGGCGGGATTGTTTTGGTAGACAAGAGGAGAGTACATGGATTTGTTAGAAAAGAGAGGA 1135
|||||| ||| ||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1207 AAGGCGAGATCGTTGTGATAGACAAGAGGAGAGTACATGGATTTGGTAGAAAAGAGAGGA 1266
Query 1136 AATCCGAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGT 1195
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1267 AATCCGAGCTTTCGGTTATTCCTTTCACTCCGGTGTTTGAGCCTATACCGTTGGAACAGT 1326
Query 1196 TTGGTCTTAATGCTAACTGTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTG 1255
||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 1327 TTGGTCTTAATGCTAACAGTTTTGGTGGGGGTGGTAGTTTCTCAAGAAGCCAGTACTTTG 1386
Query 1256 ATGAGATTGAAAAGTATCGAAGTAAA-TCCTCGAAATACGGGAAGAAAATGACAGAAATG 1314
|||||| ||||||||||||||||||| | | ||||||||||||||||||||| ||||||
Sbjct 1387 ATGAGACTGAAAAGTATCGAAGTAAAGGCAT-GAAATACGGGAAGAAAATGACGGAAATG 1445
Query 1315 GAAGAGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAAGTCGGTTCAA 1374
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 1446 GAAGAGATGATGGAAGCTGATCTATGTTGGAAAGGTCCTAACCAGGTGAAGTCGTTTCAA 1505
Query 1375 AAACGAACACCCCGACCTTCGCGGTCATTTGCTCCAAAAACAGAGGATTCCGATGAACCA 1434
||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1506 AAACGAACATCCCGATCTTCGCGGTCAGTTGCTCCAAAAACAGAGGATTCTGATGAACCA 1565
Query 1435 CGGGTCTATAAGAAAGTAACATTGAGTGCAGGTGCATATAACAAGCTGATAGATTCATAC 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1566 CGGGTCTATAAGAAAGTAACATTGAGTGCAGGTGCATATAACAAGCTGATAGATACATAC 1625
Query 1495 ATGAACAACATTGAGTCCACAATTTCAGCCAAGGACGAGCCTACCAATGTTGTTGACCAG 1554
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1626 ATGAACAACATTGAGTCCACAATTGCAGCCAAGGACGAGCCTACCAGTGTTGTTGACCAG 1685
Query 1555 TGGGAGGAGTTAAAGAAGACGAATTTCGCATTTAAACTGCATAGGGATATGGAACAA-AA 1613
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1686 TGGGAGGAGTTAAAGAAGACGAATTTCGCATTTAAACTGCATGGGGATATGGAA-AAGAA 1744
Query 1614 CTTAAGTGAGGATGGTGAGGGAGAGACTTCAGAGAACGAAATGTTATGGAGAGAAATGGA 1673
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 CTTGAGTGAGGATGGTGAGGGAGAGACTTCAGAGAACGAAATGTTATGGAGAGAAATGGA 1804
Query 1674 ACTCTGCTTGGCTTCTTCTTACATACTCGATGACAACGAGGCAAGAGTGGACAACGAGGC 1733
||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 1805 ACTATGCTTGGCTTCTTCTTACATTCTCGATGACAACGAGGTAAGAGTGGATAACGAGGC 1864
Query 1734 TTTAGAAAAGGCGAGAAGTGGTTGTGAACACGATTATAAGCTGGACGAAGAAATCGGGAT 1793
||| ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1865 TTTCGAAAAGGCGAGAAGTGGTTGTGAGCACGATTATAGGCTGGAGGAAGAAATCGGGAT 1924
Query 1794 GTGTTGCAGGTTATGTGGTCATGTAGGAACTGAGATAAAAGATGTATCTGCACCATTTGC 1853
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1925 GTGTTGCAGGTTATGTGGTCATGTAGGAAGTGAGATAAAAGATGTATCTGCACCATTTGC 1984
Query 1854 AGAACATAAGAAATGGACAATGGACACTAAGCAGCTCGAAGAAGATGACATAAAGACTAA 1913
|||||||||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct 1985 AGAACATAAGAAATGGACCATAGAGACTAAGCATATCGAAGAAGATGACATAAAGACTAA 2044
Query 1914 GTTGAGCCACAAAGAAGGCGAGACTGAAGATTTCACTATG-TCAAGTGATTCTTCGA-AA 1971
||||||||||||||||| | ||||| |||||||| ||||| | |||||||||||| | ||
Sbjct 2045 GTTGAGCCACAAAGAAGCCCAGACTAAAGATTTCTCTATGAT-AAGTGATTCTTC-AGAA 2102
Query 1972 ATGCTTGCCGCTGAAGAAAGTGAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAA 2031
|||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2103 ATGCTTGCGGCTGAAGAAAGTGACAACGTTTGGGCATTAATACCTAAGCTTAAGAGAAAA 2162
Query 2032 CTACATATGCATCAACGAAGAGCTTTTGAGTTTCTCTGGAGAAATCTAGCAGGATCTGTG 2091
|||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2163 CTACATGTGCATCAACGAAGAGCTTTCGAGTTTCTCTGGAGAAATGTAGCAGGATCTGTG 2222
Query 2092 GAACCCTCGCTTATGGATCCCACTTCAGATAACATAGGTGGTTGTGTGATCTCTCATTCT 2151
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2223 GAACCCTCGCTTATGGATCCCACTTCAGGTAACATAGGTGGTTGTGTGATCTCTCATTCA 2282
Query 2152 CCAGGAGCTGGTAAAACTTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTT 2211
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 2283 CCTGGAGCTGGTAAAACATTCCTAATCATTGCTTTCCTCACTAGCTACTTGAAGCTATTT 2342
Query 2212 CCCGGGAAAAGACCCTTGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAG 2271
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 CCCGGGAAAAGACCTTTGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAG 2402
Query 2272 TTCATCAAATGGGAGATCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGT 2331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2403 TTCATCAAATGGGAGATCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTATTGT 2462
Query 2332 ACCTTCAAGCAGAACAGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTT 2391
|||||||| ||||||| || ||||||||||||||||||| |||||||||| |||||||
Sbjct 2463 ACCTTCAAACAGAACAAAACGGTTCAGTTCAATGGAGTTCCTAAACCGAGCCGAGATGTT 2522
Query 2392 ATGCATGTTCTTGATTGCTTAGAAAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTT 2451
|||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||
Sbjct 2523 ATGCATGTTCTTGATTGCCTAGAAAAAATACAGAAATGGCATGCTCATCCGAGTGTTCTT 2582
Query 2452 GTAATGGGTTACACCTCGTTT-CTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCG 2510
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||
Sbjct 2583 GTAATGGGTTACACCTCGTTTAC-GACTTTGATGAGGGAAGACTCGAAGTTTGCTCACCG 2641
Query 2511 -AAAGTACATGGCTAAAGTGCTAAGAGAGAGTCCTGGGCTTCTTGTTCTTGATGAAGGAC 2569
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2642 GAAA-TACATGGCTAAAGTGCTAAGAGAGAGTCCCGGGCTTCTTGTTCTTGATGAAGGGC 2700
Query 2570 ATAACCCAAGGAGTACCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACT 2629
||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 2701 ATAACCCGAGGAGTACCAAGTCAAGACTACGTAAGGCCTTGATGAAAGTTGGTACTGACT 2760
Query 2630 TAAGGATACTTCTTTCGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGC 2689
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2761 TAAGAATACTTCTTTCGGGTACTTTGTTTCAGAACAACTTTTGCGAGTACTTCAACACGC 2820
Query 2690 TGTGTTTGGCTAGACCAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCAGAAATTCA 2749
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2821 TATGTTTGGCTAGACCAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCAGAAATTCA 2880
Query 2750 AGACCAATCAAAGTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCT 2809
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2881 AGACCAATCACGGTGTGAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTAT 2940
Query 2810 TCATCGATATAATTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTTCAAGGTC 2869
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2941 TCCTCGATATAATTGCCAAGAAGATTGATGCAAGCGTGGGAGATGAACGCCTTCAAGGTC 3000
Query 2870 TCAATATGTTGAAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTG 2929
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3001 TCAATATGTTGAAGAATATGACTAATGGTTTCATTGATAACTATGAAGGGAGTGGAAGTG 3060
Query 2930 GAAGTGGCGATGCTCTTCCCGGTCTACAAATCTATACACTAGTGATGAACTCGACGGATA 2989
||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 3061 GAAGTGGTGATGCTCTTCCAGGTCTACAGATCTATACATTAGTGATGAACTCGACGGATA 3120
Query 2990 TACAGCATAAGATACTCACAAAACTTCAGGATGTAATAAAGACTTA-TTTCGGGTATCCA 3048
||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||
Sbjct 3121 TACAGCATAAGATACTCACGAAACTTCAGGATGTAATAAAGACGTACTTT-GGGTATCCA 3179
Query 3049 CTCGAGGTCGAGCTTCAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCA 3108
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 3180 CTTGAGGTCGAGCTTCAGATAACATTAGCAGCTATACATCCGTGGTTGGTCACAAGCTCA 3239
Query 3109 AACTGTTGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCAC 3168
|||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 3240 AACTGTTGCACAAAATTCTTCAACCCGCAAGAACTTTCCGAGATCGGAAAACTCAAGCAC 3299
Query 3169 GATGCAAAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAG 3228
|| |||||||||||||||||||||||||||||| |||||||| | | |||||||||||||
Sbjct 3300 GACGCAAAGAAAGGATCTAAAGTCATGTTTGTGTTAAACCTTATTTTCCGAGTGGTCAAG 3359
Query 3229 AGGGAGAAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACCGAACTG 3288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3360 AGGGAGAAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACCGAACTG 3419
Query 3289 TTTGAGAATGTTTTCAGGTGGCAAAGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTT 3348
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3420 TTTGAGAACATTTTCAGGTGGCAAAGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTT 3479
Query 3349 GAACTGTTCGAGAGAGG-CAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCATCCCG 3407
|| ||||| || ||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 3480 GAGCTGTTTGAAAGAGGTC-GAGTGATAGACAAATTCGAAGAACCTGGAAACCCATCCCG 3538
Query 3408 AGTCTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACG 3467
|||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3539 AGTCCTCCTGGCCTCGATCACAGCTTGCGCAGAAGGGATTAGTCTGACCGCTGCTTCACG 3598
Query 3468 GGTCATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGC 3527
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 3599 GGTCATCATGCTCGACTCAGAATGGAACCCTTCTAAGACAAAGCAAGCTATAGCTCGTGC 3658
Query 3528 ATTCAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACATT 3587
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3659 ATTCAGACCGGGACAGCAGAAAGTTGTTTACGTTTATCAGCTCTTGTCCAGAGGAACATT 3718
Query 3588 AGAGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAG 3647
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3719 AGAGGAAGACAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGTGTATGATATTCAG 3778
Query 3648 TGAGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCT 3707
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 3779 TGAGGAGTTTGTTGCGGATCCATCTCTGTGGCAAGCTGAGAAGATTGAAGATGATATTCT 3838
Query 3708 TAGAGAGATCGTTGGAGAAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAA 3767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3839 TAGAGAGATCGTTGGAGAAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAA 3898
Query 3768 GGCTTCAACAGGGTAA 3783
||||||||||||||||
Sbjct 3899 GGCTTCAACAGGGTAA 3914
> AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38
| chr3:14755798-14760085 REVERSE LENGTH=3879
Length=3879
Score = 1995 bits (1080), Expect = 0.0
Identities = 2192/2711 (81%), Gaps = 147/2711 (5%)
Strand=Plus/Plus
Query 1141 GAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGTTTGGT 1200
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1129 GAGCTTTCGGTTATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGT 1188
Query 1201 CTTAATGCTAACT-GTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTGATGA 1259
|| ||||| || | |||| || | ||| | || | || ||| | | | |||||
Sbjct 1189 CTCAATGC-AAATAGTTT--GT-GTGGT-G--GTGTCTCTGGAA---ATTTGATGGATGA 1238
Query 1260 GATTGAAAAGTATCGAAGTAAATCCTCGAAATACGGGAAG-A-AA-ATGACAGAA-A-TG 1314
||| || |||||||| |||||| | |||||||||||||| | || | || |||| | ||
Sbjct 1239 GATCGATAAGTATCGTAGTAAAGCAGCGAAATACGGGAAGAAGAAGAAGA-AGAAGATTG 1297
Query 1315 GAA--G-AGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAA-GTCGGT 1370
|| | ||| |||||||||||||||| ||||||| || ||| | | | ||| || |||
Sbjct 1298 AAATGGAAGA-GATGGAATCTGATCTAGGTTGGAATGGACCT-A-T-TGGGAATGT-GGT 1352
Query 1371 TCA-AAAACG-AA--CACCCCGACCT-TCG----CGGT-CATTTGCT-CCAAAAACAGAG 1419
||| |||| | || ||| | | | ||| ||| | ||| || ||| | ||
Sbjct 1353 TCATAAAA-GAAATGGACCGC-A-TTCTCGAATAAGGTCCGTTT-CTAGGGAAACCGGA- 1407
Query 1420 GATTCCGATGAACCACGGGTCTATAAGAA-AGTAACATTGAGTGCAGGTGCATATAACAA 1478
| ||| || ||||| | | | |||||||| || ||| ||||| |||||||| ||||||||
Sbjct 1408 GTTTCTGAGGAACCGCAGATTTATAAGAAGAG-AACGTTGAGCGCAGGTGCGTATAACAA 1466
Query 1479 GCTGATAGATTCATACATGAACA-ACATTGAGTCCACAATTTCAGCCAAGGAC-GAGCCT 1536
| ||||||| || ||||||| | | ||||| || |||||| ||||||||||| || |
Sbjct 1467 GTTGATAGACTCGTACATGAGTAGA-ATTGATTCTACAATTGCAGCCAAGGACAAAG-CA 1524
Query 1537 ACCAATGTTGTTGACCAGTGG-GAGGAGTTAAAGAA-GACG-AA---TTTCGCATTTAAA 1590
|||||||||||||| |||||| ||| ||||||||| || || ||||| || ||
Sbjct 1525 ACCAATGTTGTTGAGCAGTGGCAAGG-GTTAAAGAACCCCGCAAGCTTTTCG-ATCGAAG 1582
Query 1591 CTGCATAGGGATATGGAACAAAACTTA--AGTGAGGATGG-TGAGGGAGAGACTTCAGAG 1647
| | | | || | || | | | || ||||| || ||| || ||||||||||||
Sbjct 1583 CCG-A-A--GA-AAGG---TTGAGTGAGGAG-GAGGA-GGATGATGGCGAGACTTCAGAG 1632
Query 1648 AACGAAATGT-TATGGAGAGAAATGGAACTCTGCTTGGCTTCTTCTTACATACTCGATGA 1706
|| || || | ||||||| ||||||||||| |||||||||||||||||||| || |||||
Sbjct 1633 AATGAGAT-TCTATGGAGGGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTTGATGA 1691
Query 1707 CAACGAGGCAAGAGTGGACAACGAGGCTTTAGA-AAAGGCGAGAAGTGGTTGTGAACACG 1765
| | |||| |||||||| |||||||| || | ||| || | ||| ||||||||| |
Sbjct 1692 CCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAA-GCAACCTGTGATTGTGAACATG 1750
Query 1766 ATTAT-AAGCTGGACGAAGAAATCGGGATGTGTTGCAGGTTATGTGGTCATGTAGGAACT 1824
| ||| || || | ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1751 ACTATGAA-TTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTGGTCATGTAGGAACT 1809
Query 1825 GAGATAAAAGATGTATCTGCACCATTTGCAG-AACATAAGAAATGGACAATGGACACTAA 1883
||||||||| |||| |||||||| ||||| | || ||||||||||| | ||| |||||
Sbjct 1810 GAGATAAAACATGTTTCTGCACCTTTTGC-GCGGCACAAGAAATGGACGACGGAGACTAA 1868
Query 1884 GCAGCTCGAA-GAAGATGACA-TAA-A-GACTA-AGTTGAGCCACA-AAGAAGGCGAGAC 1937
||| || || |||||||||| ||| | |||| |||| | ||| | | | || ||||
Sbjct 1869 GCAAATC-AACGAAGATGACATTAATACTACTATAGTT-AACCA-AGATGGAGTTGAGA- 1924
Query 1938 TG-AAGA-TTTCACTATGTCAAG-TGATTCTTCGA-AAATG-CTTGCCGCTGAAGAAAGT 1992
| | | ||||||||| | || || ||| || | | ||| | | | ||||||||||||
Sbjct 1925 -GCCATACTTTCACTAT-ACCAGTTGCTTCCTC-AGATATGCCAT-CGGCTGAAGAAAGT 1980
Query 1993 GAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAACTACATATGCATCA-ACGAAG 2051
|| || || ||| | |||||||||||||||||||||||||| ||| |||| || | ||
Sbjct 1981 GACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA-AAAA 2039
Query 2052 AGCTTTTGAGTTTCTCTGG-AGAAATCTAGCAGGATCTGTGGAACCCTCGCTTATGGATC 2110
||||||||||||||||||| || || ||||| || || |||| ||| || | |||||||
Sbjct 2040 AGCTTTTGAGTTTCTCTGGAAG-AACCTAGCCGGGTCAGTGGTTCCCGCGATGATGGATC 2098
Query 2111 CCACTTCAGATAACATAGGTGGTTGTGTGA-TCTCTCATTCTCCAGGAGCTGGTAAAAC- 2168
| | ||||||||| |||||||| ||||| | | |||||| |||| ||||| || |||||
Sbjct 2099 CGAGTTCAGATAAGATAGGTGGGTGTGT-AGTTTCTCATACTCCCGGAGCAGGAAAAACA 2157
Query 2169 TTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTTCCCGGG-AAAAGACCCT 2227
||| ||||| || ||||| ||| | |||||||||||| ||||| ||||| |||||||| |
Sbjct 2158 TTT-CTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTT-CCGGGTAAAAGACCTT 2215
Query 2228 TGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAGTTCATCAAATGGGAGA 2287
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275
Query 2288 TCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGTACCTTCAA-GCAGAAC 2346
| || || || ||||| ||| |||| ||||| ||||||||||||| | ||| | ||||
Sbjct 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAG-AGAAG 2334
Query 2347 AGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTTATGCATGTTCTTGAT 2406
| | || |||||||| | ||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 2335 A-C-CA-TTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGAC 2391
Query 2407 TGCTTAGA-AAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTTGTAATGGGTTACAC 2465
|| ||||| ||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 2392 TGTTTAGACAAA-ATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACAC 2450
Query 2466 CTCGTTTCTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCGAAAGTACATGGCTAA 2525
|||||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||
Sbjct 2451 ATCGTTTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAA 2510
Query 2526 AGTGCTAAGAGAGAGTCCTGGGCTT-CTTGTTCTTGATGAAGGACATAACCCAAGGAGTA 2584
||| || |||||| |||||| || || ||||| || || ||||||||||| |||||||
Sbjct 2511 AGTACTGAGAGAGTCTCCTGGA-TTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTA 2569
Query 2585 CCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACTTAAGGATACTTCTTT 2644
|||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 2570 CCAAGTCGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTT 2629
Query 2645 CGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGCTGTGTTTGGCTAGAC 2704
| ||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 2630 CTGGTACATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGAC 2689
Query 2705 CAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCA-GAAATTCAAGACCAATCAAA-- 2761
| |||||| |||||||||||||| ||||||| || || ||| ||| ||||||| |||
Sbjct 2690 CCAAGTTTGTTCATGAGGTTCTAGTGGAGTTGGA-CAAGAAGTTCCAGACCAACCAAGCC 2748
Query 2762 GTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCTTCATCGATATAA 2821
| | ||| | ||||||||||||||| || ||||||||||| || |||||| | || || |
Sbjct 2749 GAGCAAA-A-GGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTA 2806
Query 2822 TTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTT-CAAGGTCTCAATATGTTG 2880
| |||||||||||||| || ||||| ||||| ||| || || |||||||| ||||||
Sbjct 2807 TAGCCAAGAAGATTGACACAAAAGTGGGCGATGAGCGC-TTGCAGGGTCTCAACATGTTG 2865
Query 2881 AAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTGGAAGTGGCGAT 2940
| ||| ||||| | | ||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 2866 AGGAATATGACGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGAT 2925
Query 2941 GCTCTTCCC-GGTCTACAAATCTATACACTAGT-GATGAACTCGACGGATATACAGCATA 2998
| ||| ||| ||| | || || || ||| | || |||||| || || ||| ||||||| |
Sbjct 2926 GTTCT-CCCAGGTTTGCAGATTTACACATT-GTTGATGAATTCCACTGATGTACAGCACA 2983
Query 2999 AGA-TACTCACAAAACTTCAGGATGTAATAA-AGACTTATT-TCGGGTATCCACTCGAGG 3055
||| | || || ||||||||| | |||| | ||||| | || ||||||||||||
Sbjct 2984 AGAGT-CTTACCAAACTTCAGAACATAATGTCA-ACTTACCAT-GGATATCCACTCGAGC 3040
Query 3056 TCGAGCTT-CAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCAAACTGT 3114
||||| || | ||||| || || ||||| |||||||||||||||| | | ||| ||||
Sbjct 3041 TCGAG-TTACTCATAACGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGT 3099
Query 3115 TGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCACGATGCA 3174
||| |||||||||||||| || || ||||||||||| || || |||||||||||||||
Sbjct 3100 TGCGCCAAATTCTTCAACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCA 3159
Query 3175 AAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAGAGGGAG 3234
||||||||||| ||||||||||||||||| || ||||| | ||| |||||||||||||||
Sbjct 3160 AAGAAAGGATCAAAAGTCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAG 3219
Query 3235 AAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACC-GAACTGTTTGA 3293
|| ||| | || ||||| |||||||||||||| ||||| ||||| | || ||||| ||
Sbjct 3220 AAAATCCTCATATTTTGTCACAACATTGCGCCGATCCGCCTGTTT-CTTGAGCTGTTCGA 3278
Query 3294 GAATGTTTTCAGGTGGCAA-AGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTTGAAC 3352
|||||| ||||||||| || |||||| ||||| || ||||||| || || ||||| || |
Sbjct 3279 GAATGTATTCAGGTGG-AAGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGC 3337
Query 3353 TGTTCGAGAGAGGCAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCA-TCCCGAGT- 3410
|||| || ||||||||||| ||||||||||||||||| || ||| || | ||||| ||
Sbjct 3338 TGTTTGAAAGAGGCAGAGTAATAGACAAATTTGAAGAGCCAGGAGGCC-AGTCCCGTGTT 3396
Query 3411 CTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACGGGT 3470
|| ||||| || || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 3397 CTG-CTGGCTTCGATTACAGCCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGT 3455
Query 3471 CATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGCATT 3530
|||||||| || || || ||||| ||||| |||||||||||||| || || ||||||||
Sbjct 3456 GATCATGCTTGATTCAGAGTGGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATT 3515
Query 3531 CAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACA-TTAG 3589
||||||||||||||||||||| || || ||||| ||||||||||| ||||||||| || |
Sbjct 3516 CAGACCGGGACAGCAGAAAGTGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTT-G 3574
Query 3590 AGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAGTG 3649
| ||||| || ||||||||||| || |||||||| |||||||| |||||||| |||||||
Sbjct 3575 AAGAAGACAAATACAGGAGGACGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTG 3634
Query 3650 AGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCTTA 3709
| || ||||| | ||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3635 AAGAATTTGTGGAGGACCCATCTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTA 3694
Query 3710 GAGAGATCGTTGGAG-AAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAAG 3768
|||| ||||| |||| |||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct 3695 GAGAAATCGT-GGAGGAAGACAAAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAA 3753
Query 3769 GCTTCAACAGG 3779
|||||||||||
Sbjct 3754 GCTTCAACAGG 3764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 188427037908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5