BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351206
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21120.1 | Symbols: EIL2 | ETHYLENE-INSENSITIVE3-like 2 | ch... 2060 0.0
AT3G20770.1 | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 fa... 163 4e-39
> AT5G21120.1 | Symbols: EIL2 | ETHYLENE-INSENSITIVE3-like 2 |
chr5:7182621-7184342 FORWARD LENGTH=1722
Length=1722
Score = 2060 bits (1115), Expect = 0.0
Identities = 1352/1466 (92%), Gaps = 18/1466 (1%)
Strand=Plus/Plus
Query 2 TGTGCGATGATCTGAGTAGTGATGAAGAAATGGAAATAGAGGAGCTTGAGAAGAAGATCT 61
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 112 TGTGCGATGATCTGAGTAGTGATGAGGAAATGGAAATAGAGGAGCTTGAGAAGAAGATCT 171
Query 62 GGAGAGACAAGCAGCGTTTAAAGCGGCTCAAGGAAATGGCGAGGAACGGTGTAGGAAAAA 121
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 172 GGAGAGACAAGCAGCGTTTAAAGCGGCTCAAGGAAATGGCGAAGAACGGTCTAGGAACAA 231
Query 122 GATTGATGTTGAAGCAGCATCATGATGATTTTCCAGAGCATTCGAGTAAGAGAACGATGT 181
||||| ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||
Sbjct 232 GATTGTTGTTGAAGCAGCAACATGATGATTTTCCAGAGCACTCTAGTAAGAGAACCATGT 291
Query 182 ACAAGGCACAAGATGGGATCTTGAAGTACATGTCTAAGACAATGGAGCGATGCAAAGCTC 241
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 292 ACAAGGCACAAGATGGGATCTTGAAGTACATGTCGAAGACAATGGAGCGATATAAAGCTC 351
Query 242 AAGGTTTCGTTTACGGGATCGTTTTAGAGAACGGGAAAACGGTAGCGGGATCTTCTGATA 301
||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 352 AAGGTTTTGTTTATGGGATTGTGTTAGAGAATGGGAAAACGGTAGCGGGATCTTCTGATA 411
Query 302 ATCTCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGACAGGAACGGACCAGCTGCTATAA 361
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 412 ATCTCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGATAGGAACGGCCCAGCTGCTATAA 471
Query 362 TCAAGCACCAGCGGGATATCAATCTTTCTGATGGAAGTGATTCAGGGTCTGAGGTTGGGG 421
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCAAGCACCAAAGGGATATCAATCTTTCTGATGGAAGTGATTCAGGGTCTGAGGTTGGGG 531
Query 422 AATGTACCGCGCATAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTTATCGG 481
| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATTCTACCGCACAGAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTTATCGG 591
Query 482 CTCTGTTGCCTCACTGCAAGCCTCCTCAAAGGCGGTTTCCTTTGGAGAAAGGCGTGACAC 541
||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 592 CTCTGTTTCCTCACTGCAACCCTCCTCAGAGGCGGTTTCCGTTGGAGAAAGGCGTGACAC 651
Query 542 CACCATGGTGGCCAACAGG-ACAAGAAGATTGGTGGGATCAACTGTCTTTACCCGAGGAT 600
| |||||||||||||| || | ||||||||||||||||||||||||||||||||| |||
Sbjct 652 CGCCATGGTGGCCAACGGGGA-AAGAAGATTGGTGGGATCAACTGTCTTTACCCGTTGAT 710
Query 601 TTTCGAGGACTTTCTCCACCTTACAAGAAGCCTCATGATTTGAAGAAGCTGTGGAAAATT 660
|||||||| || | |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 711 TTTCGAGGTGTTCCGCCACCTTACAAGAAGCCTCATGATCTCAAGAAGCTGTGGAAAATT 770
Query 661 GGTGTATTGATTGGTGTAATCAGACATATGGCTTCAGACATTAGCAACATACCGAATCTC 720
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 771 GGTGTTTTGATTGGTGTAATCAGACATATGGCTTCTGACATTAGCAACATACCCAATCTC 830
Query 721 GTGAGACGGTCTAGAAGTTTGCAGGAGAAAATGACTTCAAGAGAAGGTGCTTTATGGCTC 780
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 831 GTGAGACGGTCTAGAAGTTTGCAGGAGAAAATGACGTCAAGAGAAGGCGCTTTATGGCTC 890
Query 781 GCTGCTCTCAACCGAGAAAAGGCTATTGTTGATCAAATAGCTTTCTCTAGAGAAAACAAC 840
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 891 GCTGCTCTTTACCGAGAAAAGGCTATTGTTGATCAAATAGCCATGTCTAGAGAAAACAAC 950
Query 841 AACACTTGTAACTTTCTTGTTCCTGCAACCGGTGGCGACAC-GAATCTTTTATTTCCTGA 899
||||||| ||||||||||||||||||||||||||| ||| | || | |||| ||||||||
Sbjct 951 AACACTTCTAACTTTCTTGTTCCTGCAACCGGTGGAGACCCAGA-TGTTTTGTTTCCTGA 1009
Query 900 GTCTGCAAATTATGATGTTGAAGTGATTGGTGGCTCGT-ATCGGATCAATCAGCAGTATC 958
||| || | |||||||||||| ||||||||||| | | |||||| ||||||||||||||
Sbjct 1010 ATCTACAGACTATGATGTTGAACTGATTGGTGGCAC-TCATCGGACCAATCAGCAGTATC 1068
Query 959 CTGAATTTGAAAACAACTATAATTGTGTTAACAAGAGGAAGTTTGAAGAGGAATTTGGGA 1018
||||||||||||||||||| || |||||| ||||||| ||||||||||| || |||||||
Sbjct 1069 CTGAATTTGAAAACAACTACAACTGTGTTTACAAGAGAAAGTTTGAAGAAGATTTTGGGA 1128
Query 1019 TATCAATGCAACCGATACTCCTAACATGTGAGAATAGTCTCTGTCCTTATAGCCAACCAC 1078
| ||||||| || | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1129 TGCCAATGCATCCAACACTCCTAACATGTGAGAACAGTCTCTGTCCTTATAGCCAACCAC 1188
Query 1079 ATATGGGATTTCATGACAGGAACTTAAGAGCGAATCACCAAATGACTTGTCCTTACAAAG 1138
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1189 ATATGGGATTTCTTGACAGGAACTTAAGAGAGAATCACCAAATGACTTGTCCTTATAAAG 1248
Query 1139 TCACTTCCTTCTACCAACCCACTAAACCCTATGGCATGGCCGGTTTAATGGTTCCTTTTC 1198
||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||| ||
Sbjct 1249 TCACTTCCTTCTACCAACCAACTAAACCCTATGGTATGACGGGTTTAATGGTTCCTTGTC 1308
Query 1199 CGGATTATAACCGGATGCAGCAGCAGGTTCAGAGCATTCAGGACCAGTTTAATCATCCCA 1258
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1309 CGGATTATAACGGGATGCAGCAGCAGGTTCAGAGCTTTCAAGACCAGTTTAATCATCCCA 1368
Query 1259 ACAATCTCTACAGACCAAAAGCTCCACAAACAGGAAGCAACAACGATGACTTGGTTGAGG 1318
|| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 1369 ACGATCTCTACAGACCAAAAGCTCCACAAAGAGG---CAAC---GATGACTTGGTTGAGG 1422
Query 1319 ATTTGAGTCCT-C-C-TTCGACGCTGAATCAGAATCTTGGTTTAGTCTTACCTACTGACT 1375
|||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ATTTGAATCCTTCTCCTTCGACGCTGAATCAGAATCTTGGTTTAGTCTTACCTACTGACT 1482
Query 1376 TCAATGGCGATGTGGAAACAGTAGGAATGGAGAACAACAATCAGCAGAATCAAGAGCAAG 1435
||||||| | || |||||||||||||| |||||||| || ||| ||||||| |||||
Sbjct 1483 TCAATGGAGGTGAGGAAACAGTAGGAACAGAGAACAA---TCTGCATAATCAAGGGCAAG 1539
Query 1436 AGTTGTCCACATCTTGGATTCAGTAA 1461
||||| ||||||||||||||||||||
Sbjct 1540 AGTTGCCCACATCTTGGATTCAGTAA 1565
> AT3G20770.1 | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3
family protein | chr3:7260432-7263352 REVERSE LENGTH=2413
Length=2413
Score = 163 bits (88), Expect = 4e-39
Identities = 432/590 (73%), Gaps = 55/590 (9%)
Strand=Plus/Plus
Query 190 CAAGATGGGATCTTGAAGTACATGTCT-AAGACAATGG-AGCGATGCAAAGCTCAAGG-T 246
|||||||||||||||||||| |||| | |||| |||| || || ||||||||||| |
Sbjct 542 CAAGATGGGATCTTGAAGTATATGT-TGAAGATGATGGAAG-TTTGTAAAGCTCAAGGCT 599
Query 247 TTCGTTTACGGGATCGTTTTAGAGAACGGGAAAACGGTAG-CGGGAT-CTTCTGATAATC 304
|| ||||| ||||| || ||||| ||||| | || | | || | |||||||||||
Sbjct 600 TT-GTTTATGGGATTATTCCGGAGAATGGGAAGCCTGT-GACTGG-TGCTTCTGATAATT 656
Query 305 TCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGA-CAGGAACGGACCAGCTGCTATAATC 363
| | || ||||||||||| || || |||||||| | | || || || || ||||| | |
Sbjct 657 TAAGGGAGTGGTGGAAAGATAAGGTTAGGTTTGATC-GTAATGGTCCTGCGGCTATTACC 715
Query 364 AAGCA-CCAGCGG-GATATCAATCTTTCTGATGGAAGTGATTCAGGGT-CTGA---GGTT 417
||| | | ||||| || || ||| | | | || | | | | | ||| | | | ||
Sbjct 716 AAGTATCAAGCGGAGA-AT-AAT-ATCCCG--GGGATTCA-TGAAGGTAATAACCCGATT 769
Query 418 GGGGAATGTAC-CGCGCATAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTT 476
||| | || | | |||| |||| ||||||||||| || ||||||||| | || ||
Sbjct 770 --GGACCG-ACTC-CTCATACCTTGCAAGAGCTTCAAGACACGACTCTTGGATCGCTTTT 825
Query 477 ATCGGC-TCTGTTGCCTCACTGCAAGCCTCCTCAAAGGCGGTTTCCTTTGGAGAAAGGCG 535
|| || | || ||| ||||| | |||||||| || || ||||||||||||||||| |
Sbjct 826 GTCTGCGT-TGATGCAACACTGTGATCCTCCTCAGAGACGTTTTCCTTTGGAGAAAGGAG 884
Query 536 TGACACCACCATGGTGGCC-AACAGGACAAGAAGATTGGTGGGATCAAC-TGTCTTTACC 593
| | || || |||||||| || ||| |||| ||||||||| ||||| || ||| ||
Sbjct 885 TTCCTCCTCCGTGGTGGCCTAATGGGA-AAGAGGATTGGTGGCCTCAACTTG-GTTTGCC 942
Query 594 CGAGGATTTTCGAGGACTTTCTCCACCTTACAAGAAGCCTCATGATTTGAAGAAG-CTGT 652
| || || ||| | || |||||||||||||||||||||||||||||||| | ||
Sbjct 943 TAAAGA---TCAAGG---TCCTGCACCTTACAAGAAGCCTCATGATTTGAAGAAGGC-GT 995
Query 653 GGAAAATTGGTGTATTGATTG-GTGTAATCA-GACATATGGCTTCA-GACATTAGC-AAC 708
||||| | || || |||| || | || |||| | |||||| ||| || ||| || ||
Sbjct 996 GGAAAGTCGGCGTTTTGACTGCG-GTTATCAAG-CATATGT-TTCCTGATATT-GCTAAG 1051
Query 709 ATACCG-AATCTCGTGAGACGGTCTAGAA-GTTTGCAGGAGAAAATGACT 756
|| ||| || |||||||| | |||| || |||||||||| || ||||||
Sbjct 1052 AT-CCGTAAGCTCGTGAGGCAATCTA-AATGTTTGCAGGATAAGATGACT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5