BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351234
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22090.1 | Symbols: | Protein of unknown function (DUF3049)... 2056 0.0
> AT5G22090.1 | Symbols: | Protein of unknown function (DUF3049)
| chr5:7314583-7316651 REVERSE LENGTH=1972
Length=1972
Score = 2056 bits (1113), Expect = 0.0
Identities = 1310/1402 (93%), Gaps = 26/1402 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 223
Query 61 ATAGTGACAATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTGAGGCGT 120
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 224 ATAGTGAGTATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTTAGGCGA 283
Query 121 ACCTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCGCAAAATGGGTTTTCTCCTATG 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 284 ACTTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCCCAAAATGGGTTTTCTCCTATG 343
Query 181 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTGCTGAC------GAAGCAGAGGAAGAATCA 234
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 344 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTCCTGACGAAGAAGAAGCAGAGGAAGAATCA 403
Query 235 AGATCCGGTGTCGATATTTGGGCACAGATTCAACAAGACAAGAACGACAAGAAGAAAGAG 294
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 404 AGATCCGGAGTCGATATCTGGGCACAGATTCAACAAGACAAGAACGATAAGAAGAAAGAG 463
Query 295 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGTTCGATTTTGTCGGAGAAGAAGAAG 354
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 464 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGCTCGATTTTGTCTGAGAAGAAGAAG 523
Query 355 ACTGAATCGAGCAACGACGCGGTTCCTCCACCGTATGTTCATCC-TCTGATGAAACGTGC 413
|||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||
Sbjct 524 ACTGAATCGAGCAAGGACACTGTTCCTCCACCGTATGTTCATCCAT-TGATGAAACGTGC 582
Query 414 GAGTTCCTTGAGCGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 473
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGTTCCTTGAGTGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 642
Query 474 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGTTGAAATCGAGATTCA 533
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 643 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGCTGAGATCGAGATTCA 702
Query 534 GGAGGAGACCAATCTCGTTATCAACGTGACGGAGACGAAGGTAGAGGAAGTAACAGAGGC 593
|| ||||||||||||||| | |||||||||||||||||||| || ||| |||||||| |
Sbjct 703 TGATGAGACCAATCTCGTTGTTAACGTGACGGAGACGAAGGTTGAAGAAATAACAGAGAC 762
Query 594 TGAGGTTGAGATTGAGCAAGAATCA--A-TCACGGTTCCGAATCACATAATCGAGCTGCC 650
|||| ||| | |||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 763 TGAGATTGTGGTTGAGCAAGAATCATCAATCATTGTTCCGAATCACATAATCGAGCTGCC 822
Query 651 TCGAGGATCGTTTCCTCCTCCAATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 710
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 823 TCCAGGATCGTTTCCTCCTCCGATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 882
Query 711 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTCGAGGCTGTCTCTATGCCGTCGCA 770
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 883 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTTGAAGCTGTCTCTATGCCGTCGCA 942
Query 771 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTTCTCACCTTTGCTGAAATCAG 830
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 943 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTCCTTACTTTTGCTGAAATCAG 1002
Query 831 CGACGAACCCATTAACGAAATCGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 890
| ||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1003 CAACGAACCCA--A-CTA---CGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 1056
Query 891 CGACGAGGAGgaagaagaagaagaagacgacga--a-gaagaagaagaGGCACCAGACGA 947
|||||||||||||||||||||||| || || || | |||||||||||||||||||||||
Sbjct 1057 CGACGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGATGAAGAAGAAGAGGCACCAGACGA 1116
Query 948 GTTTGCCTACAAGCCCAATGGGCTTCTGTATAAGTTGGCACAAAAGCCCATTCCTATAAC 1007
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1117 GTTTGCCTACAAGCCCAATGGGCTTCTCTATAAGATGGCACAAAAGCCCATTCCTATAAC 1176
Query 1008 TGTTCATAGGTTGGCCTATAAACCCATTGGTGTACCCAAGAGAAACTCTAAATGGCCCGT 1067
|||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| |
Sbjct 1177 TGTTCATAGGTTGGCCCATAAACCAATTGGTGTACCAAAGAGAAACTCTCGATGGCCTAT 1236
Query 1068 AACTGATGAATTCGACACCAAATCCGATCTGTCAACTCCGGTAGTCCACTCTCTACCGCC 1127
||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 1237 GGCTGATGAATTCGACACCAAATCCGATCTGTCGACTCCGGTGGTTCACTCTCTGCCGCC 1296
Query 1128 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCGCCATCCACGGTGGACGACAC 1187
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1297 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCACCGTCCACGGTGGACGACAC 1356
Query 1188 CGTAGGAGCTGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1247
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CGTTGGGGCCGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1416
Query 1248 TTTTGGCCCAATTTCAAGCCCAAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1307
|||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ATTTGGCCCAAA--CA--C--AAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1470
Query 1308 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1530
Query 1368 GCCTTTCTGCATTGCCACTTAA 1389
|||||||||||||||||| |||
Sbjct 1531 GCCTTTCTGCATTGCCACATAA 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5