BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351266

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22430.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   859    0.0  


> AT5G22430.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr5:7433790-7434935 FORWARD LENGTH=931
Length=931

 Score =  859 bits (465),  Expect = 0.0
 Identities = 502/520 (97%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAATCAAGCAGCTGTTGCAGCATTCTTCCTTTTCGCTTTAGCCGTCTTCTCCAAC  60
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  124  ATGGCGAATCAAGCAGCTGCTGCAGCATTCTTCCTTTTCGCTTTAGCCGTCTTCTCCAAC  183

Query  61   TTCGAGCTCTCGGCTTCTTCACTTGTCAGCGGCAAGATATCTTGCCTTGACTGCCACCGC  120
            || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  184  TTGGAGCTCTCAGCTTCTTCACTTGTCAGTGGCAAGATCTCTTGCCTTGACTGCCACCGC  243

Query  121  GATTTCGACTTCTCAGGCATTAAGGTCCTCCTTAAATGCGACGGAGAGAAGAAACAGATA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  244  GATTTCGACTTCTCAGGCATTAAGGTCCTCCTTAAATGCGACGGAGAGAAGAAACAAATA  303

Query  181  ACCGCGATGGCAGCTTCAGACGGATCTTTCCGCTCAGTGCTTCCAACGGCTGACAAAAAA  240
            |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  304  ACCGCGGTGGCAGCTGCAGACGGATCTTTCCGGTCAGTGCTTCCAACGGCTGACAAAAAA  363

Query  241  GGCTCCGA-AAATTGTCTTGCAAAGCTCTTGGGAGGTCCTGAGCAACTTTATGCTCACAA  299
            |||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  364  GGCTCC-ATAAATTGTCTTGCAAAGCTCTTGGGAGGCCCTGAGCAACTCTATGCTCACAA  422

Query  300  ACACAACTTGGTCTCTGAATTGGTCAAGTCTAAACACGATTCCAAAGTTTTAACTACCTC  359
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  423  ACACAACTTGGTCTCTGAATTGGTCAAATCTAAACACGATTCCAAAGTTTTAACTACCTC  482

Query  360  AAACCCACTTGCCTTCTCTCTCTCCTGCCCCAAACCAACCCAAGATGATGTCGGAAGTAT  419
            ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct  483  AAACCCACTTGCCTTCTCTCTCTCCTGCCCCAAACCATCCCGAGATGATATCGGAAGTAT  542

Query  420  GATCGGAGATTCCAAGACTATTAATTTTCCGGGGACAGGAGGTTTTGGATTCCCACCTGC  479
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  543  GATCGGAGATTCCAAGACTATTAATTTTCCGGGGGCAGGAGGTTTTGGATTCCCACCTGC  602

Query  480  CAGCTTCTTTCCCTTCTTACCAATCATTGGTATCCCATGA  519
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  603  CAGCTTCTTTCCCTTCTTACCAATCATTGGTATCCCATGA  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5