BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351269
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22460.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1602 0.0
> AT5G22460.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:7443508-7445546 REVERSE LENGTH=1358
Length=1358
Score = 1602 bits (867), Expect = 0.0
Identities = 973/1025 (95%), Gaps = 4/1025 (0%)
Strand=Plus/Plus
Query 1 ATGATGTTTTCGGTGATGGTTGCGATCCTTGTTTGCCTTATTGGCTACATTTACCGATCA 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 185 ATGATGTTTTCGGTGACGGTTGCGATCCTTGTTTGTCTTATTGGCTACATTTACCGATCA 244
Query 61 TTTAGGCCTCCACCACCGCGAATCTGCGGCGTTCCTAACGGTCCTCCGGTTACTTCTCCA 120
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 245 TTTAAGCCTCCACCACCGCGAATCTGCGGCCATCCTAACGGTCCTCCGGTTACTTCTCCG 304
Query 121 AGAATTAAGCTCGA-TGATGGAAGATATCTTGCCTATAGAGAATCTGGGGTTGATCA-AG 178
||||| |||||| | |||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 305 AGAATCAAGCTC-AGTGATGGAAGATATCTTGCTTATAGAGAATCTGGGGTTGAT-AGAG 362
Query 179 CCAATGCTAACTACAAGATCATTGTCGTTCATGGCTTCAACAGTTCCAAAGACATTGAAT 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 363 ACAATGCTAACTACAAGATCATTGTCGTTCATGGCTTCAACAGCTCCAAAGACACTGAAT 422
Query 239 TTCCCATCCCTAAGGATCTAATTGAGGAACTTGGGATATACTTTTTGTTCTACGATAGGG 298
||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 423 TTCCCATCCCTAAGGATGTAATTGAGGAGCTTGGGATATACTTTGTGTTCTACGATAGAG 482
Query 299 CAGGATATGGAGAAAGTGATCCACACCCATCACGCACAGTTAAAAGTGAAGCATACGACA 358
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 483 CAGGATATGGAGAAAGTGATCCACACCCATCACGCACTGTTAAGAGTGAAGCATACGACA 542
Query 359 TTCAAGAACTTGCCGATAAACTCAAGATCGGACCAAAGTTCTACGTTCTTGGTATATCAC 418
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 543 TTCAAGAACTCGCCGATAAACTCAAGATCGGACCAAAGTTCTATGTTCTTGGTATATCAC 602
Query 419 TAGGTGCTTACTCGGTTTATAGTTGCCTCAAATACATTCCCCACAGACTAGCTGGAGCAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TAGGTGCTTACTCGGTTTATAGTTGCCTCAAATACATTCCCCACAGACTAGCTGGAGCAG 662
Query 479 TCTTAGTGGTTCCATTTGTGAACTACTGGTGGACTAAAGTGCCTCAAGACAAATTGAGTA 538
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 663 TCTTAATGGTTCCATTTGTGAACTATTGGTGGACTAAAGTGCCTCAAGAAAAATTGAGTA 722
Query 539 AAGCGTTGGAGCTAATGCCAAAGAAAGACCAATGGACGTTTAGAGTGGCTCATTATGTTC 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 723 AAGCGTTGGAGCTAATGCCAAAGAAAGACCAATGGACGTTTAAAGTGGCTCATTATGTTC 782
Query 599 CTTGGTTGTTATATTGGTGGTTGACTCAAAAACTGTTTCCGTCTTCAAGTATGATCACCG 658
| ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||| |
Sbjct 783 CGTGGTTGTTATATTGGTGGTTGACCCAAAAACTATTTCCGTCTTCGAGTATGGTCACGG 842
Query 659 GGAACAATGCGTTATGCAGCGATAAAGATTTGGTCATCATAAAAAAGAAAATGGAGAATC 718
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 843 GGAACAATGCGTTATGCAGCGACAAAGATTTGGTCGTCATAAAGAAGAAAATGGAGAATC 902
Query 719 CAAGCCCTGGCATGGAAAAAGTCCGGCAACAAGGTGACCATGAATGTCTTCACCGGGACA 778
|| |||||||| |||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 903 CACGCCCTGGCTTGGAAAAAGTTAGACAACAAGGAGACCATGAATGTCTTCACCGGGACA 962
Query 779 TGATAGCCGGATTCGCGACATGGGAATTCGACCCGACTGAATTAGAAAATCCGTTTGCGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGATAGCCGGATTCGCGACATGGGAATTCGACCCGACTGAATTAGAAAATCCGTTTGCGG 1022
Query 839 AAGGCGAAGGATCGGTCCACGTGTGGCAAGGGATGGAAGACAGAATCATTCCATACGAAA 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1023 AAGGCGAAGGATCGGTCCACGTTTGGCAAGGGATGGAAGACAGAATCATTCCATACGAAA 1082
Query 899 TTAATCGATACATATCACATAAGCTTCCATGGATTAAGTACCACGAGGTCTTAGGTTACG 958
|||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1083 TTAATCGATATATATCAGAGAAGCTTCCATGGATTAAGTACCATGAGGTCTTAGGTTATG 1142
Query 959 GACATCTTCTAAACGCCGAGGAGGACAAATGCAAAGAGATCATAAAGGCACTTCTTGTCA 1018
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 1143 GACATCTTCTAAACGCCGAGGAGGAGAAATGCAAAGACATTATCAAGGCACTTCTTGTCA 1202
Query 1019 ACTGA 1023
|||||
Sbjct 1203 ACTGA 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5