BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351306
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family pr... 1387 0.0
> AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family
protein | chr5:7639318-7642984 REVERSE LENGTH=1741
Length=1741
Score = 1387 bits (751), Expect = 0.0
Identities = 1124/1300 (86%), Gaps = 41/1300 (3%)
Strand=Plus/Plus
Query 1 ATGACTTTTCAACAAAGATATGCCATCGATGCCAAGCATTGGGCTGGTGCTAAAGCGAAC 60
|||||||||||||||||||| ||||| ||| ||| ||| |||| |||||||||||| |||
Sbjct 259 ATGACTTTTCAACAAAGATACGCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAAC 318
Query 61 GCACCAATCTTAGCATTTCTTGGACTGGAAGCGTCGTTAGAGACTGATTTGGCTGCCTTT 120
|| ||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
Sbjct 319 GCGCCAATCTTAGCATTTCTTGGAGAAGAATCGTCGTTAGACTCTGATTTGGCTGCCATC 378
Query 121 GGTTTTCTTAGTGACAACGCTCCTCATTTTAAA-GCGCTCAAAGTCTATATAGAGCATAG 179
||||||||| ||||||||| ||||| |||| |||||| ||||| |||||||||||
Sbjct 379 GGTTTTCTTCGTGACAACGGTCCTC-GCCTAAATGCGCTCCTCGTCTACATAGAGCATAG 437
Query 180 GTATTATGGGAAGACAATTCCATTTGGATCGGCAAAAGAAGCAATGAAGAACGCGAGTAC 239
|||||||||| |||| || ||||||||||| ||| |||||||| | |||||||| |||||
Sbjct 438 GTATTATGGGGAGACGATGCCATTTGGATCAGCAGAAGAAGCACTAAAGAACGCAAGTAC 497
Query 240 GTTGGGGTATTTGAACTCAGCTCAAGCCCTAGCAGACTACGCCGCGATTCTCTTGCACGT 299
|||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 498 GTTGGGGTATTTGAACGCAGCACAAGCCCTAGCAGACTATGCCGCGATTCTCTTGCACGT 557
Query 300 TAAGGAGAAGTACT-CAGCTACA-CACAGCCCTATCATTGTCGTAGGAGGATCCTATGGT 357
|||||||||||||| || | | | ||||||||||||||||| | |||||||||||||||
Sbjct 558 TAAGGAGAAGTACTCCA-CCA-ATCACAGCCCTATCATTGTAATTGGAGGATCCTATGGT 615
Query 358 GGAATGTTAGCGGCATGGTTTAGGCTAAAATATCCGCACATAGCACTTGGGGCATTAGCA 417
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 616 GGAATGTTAGCGGCATGGTTCAGGCTAAAATATCCACACATAGCACTCGGAGCATTAGCA 675
Query 418 TCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTATTATTATATT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTATTATTATATT 735
Query 478 ATAACCAAAGTTTTCAAGGAAACGAA-T-AAGAGATGTTACAACACGATTCGCAAATCTT 535
|||||||||||||||||||| | || | || |||||||| || || || || || ||||
Sbjct 736 GTAACCAAAGTTTTCAAGGAAGC-AAGTGAA-AGATGTTATAATACAATCCGTAATTCTT 793
Query 536 GGGA-AGAAATTGATAGAGTTGCTTCCAAACCCAACGGTTTATTGATCCTCAGCAAA-AA 593
|| | |||||| |||||||||||| ||||||||| ||| | | |||||| |||||| ||
Sbjct 794 GG-ATAGAAATCGATAGAGTTGCTGGCAAACCCAATGGTCTCTCGATCCTTAGCAAACAA 852
Query 594 GTTCAAAACTTGCGCCAGTCCACT-AA-GTAGAAGCTTCGATCTTAAAGACTTCTTGGAC 651
|||||||||||||| |||| | || | ||||||||||| | |||||||| ||||||
Sbjct 853 -TTCAAAACTTGCGC---TCCATTGAACG--GAAGCTTCGATATCAAAGACTTTTTGGAC 906
Query 652 ACGGTATACGCTGAAACTGTTCAATACAAT-GATGGT--G--TTT--GGGTGACCAACGT 704
|| |||| || ||| ||||||||||||| || ||| | ||| ||||| |||| ||
Sbjct 907 ACAATATATGCCGAAGCTGTTCAATACAACCGA-GGTCCGAATTTTTGGGTGGCCAAAGT 965
Query 705 GTGCAATGCAATCAACGCCAACCCGCCAAACCGTAAAATTGA-TATACTCGACCGGATTT 763
|||||| |||||||||||||| || |||||||||| | | | | |||||||||||||||
Sbjct 966 GTGCAACGCAATCAACGCCAATCCACCAAACCGTAGA-TACAATTTACTCGACCGGATTT 1024
Query 764 TCGCAGGTGTTGTCGCTTTAACAGGCAGCC-AATCTTGCTATAATACCAAT-TATTCTGT 821
| || ||||||||||||||| ||||| || || |||||||| |||| || | || ||
Sbjct 1025 TTGCTGGTGTTGTCGCTTTAGTAGGCAACCGAA-CTTGCTATGATACAAAAATGTT-TGC 1082
Query 822 GCAGGTCA-CAAACAATGATATGGCATGGAGATGGCAGTGCTGCAGCGAGATAGTGGTAC 880
|||| || |||||||| | || ||||||||||||||| ||||||||||||||||| | |
Sbjct 1083 GCAGC-CAACAAACAATAACATCGCATGGAGATGGCAGAGCTGCAGCGAGATAGTGATGC 1141
Query 881 CGGTGGGACATGACAAACAAGACACAATGTACCAAACATCACCGTTTAATATGACCAGTT 940
| |||||| ||||||||||||| ||||||| || ||| |||| ||||| ||||||||||
Sbjct 1142 CCGTGGGATATGACAAACAAGATACAATGTTCCCAACGGCACCATTTAACATGACCAGTT 1201
Query 941 ACATTGAAG-ACTGTGAA-TCTTCTTATGGTGTCTCTCCTAGACCACATTGGATCACAAC 998
||||||| | | ||| || |||| | |||||||| |||||||||||||||||||||||||
Sbjct 1202 ACATTGATGGA-TGT-AAGTCTTATCATGGTGTCACTCCTAGACCACATTGGATCACAAC 1259
Query 999 GTACTTCGGCACTCAAAATGTCAAGTTAATCCTCCAAAGATTTGGGAGCAACATCATTTT 1058
|| ||||||| ||| | ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1260 TTATTTCGGCATTCAGGAGGTCAAGTTAATCCTCCAAAAATTTGGAAGCAACATCATTTT 1319
Query 1059 TTCTAATGGATTATCAGATCCTTACAGCGTTGGCGGAGTTTTAGAGGATATTTCAGATAC 1118
||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1320 CTCTAATGGATTGTCTGATCCTTATAGCGTTGGCGGAGTTTTGGAGGATATTTCAGATAC 1379
Query 1119 TGTAGTCGCCATCACGACAAAAAATGGTTCACATTGTCAAGATATCAATTTGAAGAGCAA 1178
| |||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1380 TTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTCTAGATATCACCTTGAAGAGCAA 1439
Query 1179 AGGAGATCCAGAGTGGCTGGTGATGCAAAGAGAGAAAGAGATTAAAGTTATTAATTCTTG 1238
|| |||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1440 AGAAGATCCGGAGTGGCTAGTGATTCAAAGAGAGAAAGAGATTAAAGTTATTGATTCTTG 1499
Query 1239 GATTTCAACGTACCAAAATGATCTAAGAGATCTTAACATG 1278
||||||||| || |||||||||||||||||||||||||||
Sbjct 1500 GATTTCAACTTATCAAAATGATCTAAGAGATCTTAACATG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5