BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351368
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23480.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:79... 1182 0.0
> AT5G23480.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:7916314-7919278
FORWARD LENGTH=1836
Length=1836
Score = 1182 bits (640), Expect = 0.0
Identities = 756/812 (93%), Gaps = 7/812 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGATGACAATGGA-AAAGTGAAGGGTTCGAGTAAAAAGAGGTTGAGAAAACCTAA 59
||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGATGATAAT-GAGAAAGTGAAAGGTTCGAGTAAAAAGAGGTTGAGAAAACCTAA 59
Query 60 AAGTTTGGAATTTGTTGGATGGGGTTCGAAAAATCTCATTGAGTTTCTTCAGTCACTTGG 119
||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 60 AAGCTTGGAATTTGTTGGATGGGGTTCGAGAAATCTCATTGAGTTTCTTGAATCACTTGG 119
Query 120 TAGAGATACCACCAACAAGATATCTGAGAATGATGTTACAGCGATTATAATGAGCTATAT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 120 TAGAGATACCACCAACAAGATATCAGAGAATGATGTTACAGCGATTATAATGAACTATAT 179
Query 180 CCGCGAGAAAAACCGTGAAACTCCTTCCAAGAACAAGAAGAGGAGAAAGACAGTAGCTTG 239
||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 180 CCGCGAGAAGAGCCGTGAAACTCCTTTGAAGAGCAAGAAGAGGAGAAAGACAGTAGCTTG 239
Query 240 TGATGAGAAGTTGCGTTTGCTTTTCGG-GACTCAGAAGATAAATGTAATCAAAGTCCCTG 298
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 240 TGATGAGAAGTTGCGTTTGCTTTTCGGTG-CTGGGAAGATAAATGTAATCAAAGTCCCTG 298
Query 299 ATTTGATAGAGAAGCATTATGTAGAGAATCAGGA--A-GACTCATACTTTGATTATCTAT 355
||||| |||||||||||||||||||||||||||| | |||| || || |||| |||| |
Sbjct 299 ATTTGGTAGAGAAGCATTATGTAGAGAATCAGGAGGAAGACTTATTCTATGATGATCTCT 358
Query 356 ACTCTCCAGAGGATGATAAACAACAGAGATTGTCTCCATCAGATAAGGTGGCTAAACAGA 415
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 ACGCTTCAGAGGATGATAAACAACAGAGATTGTCTCTATCAGATAAGGTGGCTAAACAGA 418
Query 416 CGAAACAGGTTGTGTCAAAGCCTAAAGGTACTTTTGCTGCGATAGTGCGCGATAATGTCA 475
|||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| ||| |
Sbjct 419 CGAAACAGGTTGTGTCAAAGCCTAGAGGGACTTTTGCTGCAATAGTGCGTGATACTGTTA 478
Query 476 AGCGCCTGTATTTAAGAAAGAGTTTAGTCCAGGAACTAGCAAAGTCACCTGAAACTTTTG 535
||| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 479 AGCTTCTGTATTTGAGAAAGAGTTTAGTCCAGGAACTAGCAAAGACTCCTGAAACTTTTG 538
Query 536 AGAGTAAAGTGGTGGGGACTTTTGTGAGGATCAAGAATCCTTGTCAGCTTGTTCACGTGA 595
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 539 AGAGCAAAGTGGTGAGGACTTTTGTGAGGATCAAGAATCCTTGTCAGCTTGTTCATGTAA 598
Query 596 CAGGTGTGAAGGAGGGAAATCTGATTGATGGTAATCTTCTTCAGGTTACAAATTATTCGT 655
| ||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 599 CCGGTGTGAAGGAAGGAGATCCGATTGATGGTAATCTTTTTCAGGTTACAAATTATTCGT 658
Query 656 ATTATCTAAAAGATGTTACGACCTCTTCCCTATCAGATGATGATTTCTCTCAGGAGGAAT 715
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTATCTAAAAGATGTTACTACCTCTTCCCTATCAGATGATGATTTCTCTCAGGAGGAAT 718
Query 716 GTGAAGAACTGCATCAAAGAATAAATAATGGCTTTGCTAAGAGACTTACAGTTGTGGATA 775
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 GCGAAGAATTGCATCAGAGAATAAATAATGGCTTTGCTAAGAGACTTACAGTTGTTGATA 778
Query 776 TGGAAGAAAAGGCTCGAAGTTTGCATGAAGAT 807
||||||||||||||||||||||||||||||||
Sbjct 779 TGGAAGAAAAGGCTCGAAGTTTGCATGAAGAT 810
Score = 1098 bits (594), Expect = 0.0
Identities = 825/931 (89%), Gaps = 38/931 (4%)
Strand=Plus/Plus
Query 895 TATCTGGAAAAAAGGGAGCTTCTTCAGAATCCGGAAGAACAGTTGAGGCTATTGGATGAA 954
|||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 811 TATCTGGAGAAGAGGGAGCTTCTTCAGAATCCGGATGAACAGAAGAGGCTAGTGGATGAA 870
Query 955 GTACCAGAAATTGTGGCAGAAGAACTTGAACCTGAATGTGTAGATGATGAT-A-G--A-G 1009
|| ||||||||||| ||||||||||||||||||||||||| |||||||||| | | | |
Sbjct 871 GTTCCAGAAATTGTTGCAGAAGAACTTGAACCTGAATGTGAAGATGATGATGATGATAGG 930
Query 1010 A-AATAGAAAATGA-CCTCATTGTACCAAACCCTGAGGCTCATCAAAGTGACGAAGAACA 1067
| ||||||| || | ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 931 ACAATAGAAGAT-AGCCTCATTGTACCAAACCCTGAGGCTCATCAAAGTGACAAAGAGCA 989
Query 1068 ACGACGAAGAGATTCACCAGTTTCTTCTAGTGTCAAGAAAAGTCTAGAAAATTCCAAGCT 1127
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 990 ACGACAAAGAGATTTACCAGTTTCTTCTAGTGTCAAGAAAAGTCAAGAAAATTCCTTGCT 1049
Query 1128 TCTTAAGAATCCAGAAGAACAGTTGAGGCTGTTGCGTGAAGTTCCTGAAGTTGTTGCAGA 1187
|||||||||||| ||||| |||||||||||| || |||| ||||| || |||||||||||
Sbjct 1050 TCTTAAGAATCCGGAAGAGCAGTTGAGGCTGCTGTGTGATGTTCCCGATGTTGTTGCAGA 1109
Query 1188 AGAACTTGAACCTGAGTTTGTAGATAATGATGGGAAAA-TAGAAAATGACTTC-ATCGTA 1245
| ||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | ||||
Sbjct 1110 AAAACTTGAACCTGAGTTTGTAGATGATGAT-GGAAAACTAGTAAATGAC-GCTACCGTA 1167
Query 1246 CCAAACCCTGAGGCCTTCACTGAGGCTCATCAAAGTGATGAAGAAAAACAACTAAGTGAC 1305
||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 1168 CCAAACCCTGAAGCCTTCACTGAGGCGCATCAAAGTGATGAAGAAATACAACCAAGTGAT 1227
Query 1306 TCACCAGATTCTAGTATCCATAAAACTCTAGAAAATTCCGAGCTCCGTGATGGAGAAGAC 1365
| |||||||||||| | || | | || ||| | || | | |||||||
Sbjct 1228 TTACCAGATTCTAG--T--AT----C-C-AG-AAA-----A-CT-C----T--AGAAGAC 1263
Query 1366 CAGCCAATACAGACTGCTTCTGCAGGTAACAAGGATCTCCATGAAGATGTGTACGAGCCG 1425
||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1264 CAGCCAATATGGACTGCTTCTGCAGGTAATAAAGATCTCCATGAAGATGTGTACGAGCCG 1323
Query 1426 CCAACAAATGGCATCACACAGAACAAGGACTCTATCACTAAAGGAGAAATGAATACCAAA 1485
||| |||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1324 CCAGCAAATGGCATAACACTGAACACGGACTCTATCACTGAAGGAGAAATGAATACCAAA 1383
Query 1486 GTCAGTCAGTATCAGTCAAGTACTCCAGTGATTGATCTCTCTAACCAACCTCAAGCTCAA 1545
||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1384 GTCAGTCAGCATCAGTCAAGTACTCCAGTGATTGATCTCTCTAACAAAACTCAAGCACAC 1443
Query 1546 TCAAATCCACTAGAGATTATCGAATTGAGCGATGATGACAG-TGATGATGACAAGGACAA 1604
||||||||| | |||||||| ||||||||||||||||| | || || || ||||||||
Sbjct 1444 TCAAATCCAATTGAGATTATTGAATTGAGCGATGATGA-TGACGACGACGAAAAGGACAA 1502
Query 1605 GGATGATCAAGCTTACCAGAACTATGATCCAAAGAAGGTAATGTGGTTCTATGAATTCCC 1664
| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1503 AAACGATCAAGCTTACCAGAGTTATGATCCAAAGAAGGTGATGTGGTTCTATGAATACCC 1562
Query 1665 TAAAGGAAAAACACATGGACCATTCTCTCTCACAGATCTCAAAACGTGGAGTGACGAAGA 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TAAAGGAAAAACACATGGACCATTCTCTCTCACAGATCTCAAAACGTGGAGTGACGAAGA 1622
Query 1725 GTACTTTGTTGGAGTTCCAGATTTCAAAGTATGGAAAACAGGAGAGAGTGCAGTGTTACT 1784
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1623 GTACTTTGTTGGAGTTCCAGATTTCAAAGTATGGAAGACAGGAGAGAGTGCAGTGCTACT 1682
Query 1785 GACCAAACTTCTATCTCATATCAAAACCTAA 1815
||||||||||||||||| ||||||||||||
Sbjct 1683 AACCAAACTTCTATCTCAGATCAAAACCTAA 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5