BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351372

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23535.1 | Symbols:  | KOW domain-containing protein | chr5:...   754    0.0  


> AT5G23535.1 | Symbols:  | KOW domain-containing protein | chr5:7935401-7937372 
FORWARD LENGTH=897
Length=897

 Score =  754 bits (408),  Expect = 0.0
 Identities = 456/480 (95%), Gaps = 0/480 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGGGACAAT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  173  ATGGGCTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGAGACAAT  232

Query  61   GTGATGATAATTCGAGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGCGTCATCCGA  120
            || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  233  GTAATGATAATTCGTGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGTGTCATTCGA  292

Query  121  TCCCAAAATCGTGTTATTGTTGAAGGGAAGAATTTGATCAAGAAGCATATAAAGGGAGGC  180
            |||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||
Sbjct  293  TCCCAAAATCGTGTCATCGTTGAAGGGAAGAATCTGATCAAGAAACATATAAAGGGAGGC  352

Query  181  CCTGATCACGAAGGTGGAATTTTCACGGTAGAGGCTCCTCTTCATGCCTCAAATGTCCAA  240
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  353  CCTGATCACGAAGGTGGAATTTTCACTGTAGAGGCTCCTCTTCACGCCTCAAATGTCCAA  412

Query  241  GTTGTTGATCCAGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAGTACCTAGAGGATGGA  300
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  413  GTTGTTGATCCTGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAATACCTAGAAGATGGA  472

Query  301  ACAAAAGTAAGAGTAGCCAGAGGCACAGGCACATCTGGTTCCATAATTCCTCGACCAGAG  360
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  473  ACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATAATTCCCCGACCAGAG  532

Query  361  ATTCTAAAGATAAGGGCTACTCCAAGACCCACTACTGCTGGCCCTAAGGACACACCAATG  420
            ||||||||||||||||| || ||  ||||||| |||||||||||||||||||||||||||
Sbjct  533  ATTCTAAAGATAAGGGCAACGCCGCGACCCACAACTGCTGGCCCTAAGGACACACCAATG  592

Query  421  GAGTTTGTCTGGGAGCAAACATATGATGCTAAAACAGGAAAGGGCATGCCTGATCTTTGA  480
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  593  GAGTTTGTCTGGGAGCAGACATATGATGCTAAAACTGGAAAGGGCATGCCTGATCTTTGA  652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5