BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351411
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23940.1 | Symbols: EMB3009, PEL3, DCR | HXXXD-type acyl-tra... 2132 0.0
> AT5G23940.1 | Symbols: EMB3009, PEL3, DCR | HXXXD-type acyl-transferase
family protein | chr5:8076329-8079793 REVERSE LENGTH=1858
Length=1858
Score = 2132 bits (1154), Expect = 0.0
Identities = 1314/1393 (94%), Gaps = 4/1393 (0%)
Strand=Plus/Plus
Query 1 ATGAAGATAAAGATAATGAGCAAAACACATGTGAAACCAACAAAACCAGTACTAGGGAAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATGAAGATAAAGATTATGAGCAAAACACATGTGAAACCAACAAAACCAGTACTAGGGAAG 176
Query 61 AAACAATTCCAGCTCACCACATTTGATCTTCCTTACCTTGCTTTCTACTACAACCAGAAG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAACAATTCCACCTCACCACATTTGATCTTCCTTACCTTGCTTTCTACTACAACCAGAAG 236
Query 121 TTTCTGCTCTACAAGTTCCAGAACCTTCTAGATCTCGAGGAACCCACATTCCAAAACGAC 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTTCTACTCTACAAGTTCCAGAACCTTCTAGATCTCGAGGAACCCACATTCCAAAACGAG 296
Query 181 GTCGTGGAGAAGCTCAAAGATGGTTTGGGTTTGGTTCTTGAAGACTTCTATCAGCTCGCC 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 297 GTCGTGGAGAATCTCAAAGATGGTTTGGGTTTGGTTCTTGAAGACTTCTATCAACTCGCC 356
Query 241 GGTAAGCTGGCCAAGGACGACGAAGGAGTCTTCCGTGTTGAGTACGACGCCGACGACACA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||
Sbjct 357 GGTAAGCTGGCCAAGGACGATGAAGGAGTCTTCCGTGTTGAGTACGACGCTGAAGACTCA 416
Query 301 GAGATCAACGGCGTAGAGTTCTCAGTTGCTCATGCTGCTGACGTTACCGTCGATGATCTA 360
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 417 GAGATCAACGGCGTAGAGTTCTCCGTCGCTCATGCTGCTGACGTAACCGTCGATGATCTA 476
Query 361 ACGGCTGAGGACGGGACGGCTAAGTTCAAGGAGTTGGTTCCTTACAATGCGATCTTGAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 ACGGCTGAGGACGGGACGGCTAAGTTCAAGGAGTTGGTTCCTTACAATGGGATCTTGAAC 536
Query 421 TTGGAAGGACTTAACAGACCTCTACTTGCTGTCCAGGTGACCAAGCTAAAAGATGGGCTT 480
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 537 TTGGAAGGACTTAGCAGACCACTCCTTGCTGTCCAGGTGACCAAGCTAAAAGATGGGCTT 596
Query 481 GCAATGGGCCTAGCTTTTAATCACGCAGTCTTAGACGGGACTTCCACGTGGCATTTCATG 540
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 597 GCAATGGGCCTAGCTTTCAATCACGCAGTCTTAGACGGGACATCCACGTGGCATTTTATG 656
Query 541 AGCTCATGGGCCGAGATCTGCCGTGGAGCCCAATCTATCTCGACCCAACCATTCCTTGAC 600
|||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 657 AGCTCATGGGCCGAGATCTGTCGTGGAGCCCAATCCATCTCGACTCAACCTTTCCTTGAC 716
Query 601 CGATCGAAGGCGCGTGACACGCGCGTGAAGCTCGACCTCACTGCTCCTAAGGATCCCAAC 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 717 CGATCGAAGGCGCGTGACACGCGCGTGAAGCTCGACCTCACTGCTCCCAAGGACCCCAAC 776
Query 661 GAGACCTCCAACGGCGAAGATGCCGCCAATCCCACGGCGGTACCGCCGCAGCTTGTTGAG 720
||||||||||||||||||||||| |||||||| |||| || |||||||||||| || ||
Sbjct 777 GAGACCTCCAACGGCGAAGATGCTGCCAATCCGACGGTGGAACCGCCGCAGCTAGTAGAA 836
Query 721 AAGATCTTCAGGTTCTCGGACTCTGCTGTCCACACGATCAAGTCAAGAGCCAATTCAGTC 780
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 837 AAGATCTTCAGGTTCTCGGACTTTGCTGTCCACACGATCAAGTCAAGAGCTAATTCAGTA 896
Query 781 ATCCCATCGGACGGTTCAAAACCATTCTCCACTTTCCAATCACTCACATCACACATCTGG 840
|||||||||||| |||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 897 ATCCCATCGGACAGTTCAAAACCATTCTCAACATTCCAATCCCTGACATCACACATCTGG 956
Query 841 CGCCACGTCACCTTAGCGCGTGGACTCAAACCGGAGGACATAACGATCTTCACCGTCTTC 900
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 957 CGCCACGTCACCTTAGCGCGTGGACTCAAACCGGAGGACATAACTATTTTCACCGTCTTC 1016
Query 901 GCCGATTGCCGCCGCCGCGTTGATCCTCCAATGCCGGAGGAATATTTCGGAAACTTAATT 960
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 GCCGACTGTCGCCGCCGCGTTGATCCTCCAATGCCGGAGGAATATTTCGGAAACTTGATT 1076
Query 961 CAGGCAATCTTCACCGGAACCGCGGCGGGGCTACTAGCGGCCCACGGACCGGAATTCGGA 1020
|| || |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct 1077 CAAGCGATCTTCACCGGAACAGCGGCGGGGCTACTAGCAGCGCACGGACCGGAGTTCGGA 1136
Query 1021 GCTTCGGTGATCCAAAAAGCGATCACGGCACACGATGCGCGTGCGATCGACGCGCGTAAC 1080
|||||||||||||| ||||| ||| |||||||||| ||| ||| ||||||||| ||||||
Sbjct 1137 GCTTCGGTGATCCAGAAAGCAATCGCGGCACACGACGCGAGTGTGATCGACGCACGTAAC 1196
Query 1081 GACGAGTGGGAGAAATCGCCGAAGATATTTCAATTCAAAGACGCCGGAGTGAATTGTGTT 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 GACGAGTGGGAGAAATCGCCGAAGATTTTTCAATTCAAAGACGCCGGAGTGAATTGTGTT 1256
Query 1141 GCGGTGGGAAGCTCGCCGAGGTTTCAG-GTTTACGAAGTTGATTTCGG-TTGGGGTAAAC 1198
|||||||||||||| |||||||||| | |||||||| || |||||||| || || ||||
Sbjct 1257 GCGGTGGGAAGCTCACCGAGGTTTC-GTGTTTACGAGGTGGATTTCGGGTTTGGA-AAAC 1314
Query 1199 CGGAAATTGTGAGGAGCGGGTCGAATAACCGGTTTAATGGGATGATGTATTTGTACCAAG 1258
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CGGAAACGGTTAGGAGCGGGTCGAATAACCGGTTTAATGGGATGATGTATTTGTACCAAG 1374
Query 1259 GTAAAGCTGGAGGGATAAGTATTGATGTGGAGATTACTCTGGAAGCTTCTGTTATGGAGA 1318
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1375 GTAAAGCAGGAGGCATAAGTATTGATGTGGAGATAACTCTTGAAGCTTCTGTTATGGAGA 1434
Query 1319 AGCTTGAGAAGAGCAAAGAGTTTTTACTTAGTGAGGAGGAAGAAGAAGATGATGGTAAGA 1378
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1435 AGCTTGTGAAGAGCAAAGAGTTTTTACTTAGTGAGGAGGAAGAAGAAGATGATGGAAAGA 1494
Query 1379 AGCTCACTAATGG 1391
||||||| |||||
Sbjct 1495 AGCTCACCAATGG 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5