BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351441
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5... 1759 0.0
AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5... 1170 0.0
AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5... 475 3e-133
> AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5:8225861-8227551
FORWARD LENGTH=1131
Length=1131
Score = 1759 bits (952), Expect = 0.0
Identities = 1074/1133 (95%), Gaps = 7/1133 (1%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCAGGAAATTGAT---AGGAGGAGGAGCGATGGCCTCAGACCCA 57
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1 ATGGGACGAGGTTCTCTCAGGAAATTGATAGGAGGAGGAGGAGAGATGGCCTCAGACTCA 60
Query 58 GATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAAT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAAT 120
Query 118 TCGTACCATCGAACGTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACACAATGGAACGG 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAACGG 180
Query 178 GACAAGCAAGAGAAACGGGTAGGTTCCGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 240
Query 238 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGATAGCTCCATATACGGTGCTGTT 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTGTT 300
Query 298 TTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCTCATGTGAAAGCACCTCCACGT 357
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 301 TTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCACATGCGAAAGCGCCTCCACGT 360
Query 358 TATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGAAACTTGGATGACTGATGTGAAA 417
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGATACTTGGATGACTGATGTGAAA 420
Query 418 CATAACCTCAAATTCAGCTTCAACACCCTCCATGAAGGTGGTAGGTCTTTGCAGGCCATA 477
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CATAATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCATA 480
Query 478 CGAGCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTATATGGCTCGCTGGACAC 537
||||||||||||| ||||||||| ||||||| | ||||||| ||||| |||||||||
Sbjct 481 CGAGCAATACGCAGTATGGTGGACAAACACAGTGAAGCAGCTATCTGGCTTGCTGGACAC 540
Query 538 TCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGACAAGTTTTGGATTCCTC 597
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGACAAGTTTTGGATTCCTC 600
Query 598 CTCGAAAGTTACATATTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGG 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCGAAAGTTACATCTTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGG 660
Query 658 GGAAAAAAGATTAAAGGTGCGTTTCAATTCACCAAGACTGTCGTCAAAGCCACCGTAGCC 717
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GGAAAAAAAATTAAAGGTGTGTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGTAGCT 720
Query 718 ATGGTCTTAACCGATCTTCAGGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCT 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGTCTTAACCGATCTACAGGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCT 780
Query 778 TATTTATATGTGAACCCAGAAGATCCAATATGTGCAGGATACATTGATTACTTCAAACAC 837
|||||||| |||||||||| ||||||||||||||| |||||||| |||||||||| ||||
Sbjct 781 TATTTATACGTGAACCCAGCAGATCCAATATGTGCGGGATACATCGATTACTTCAGACAC 840
Query 838 AAAACCTTCATGTCTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTGCTGGAAAGTC 896
||||||||||||||| |||| || |||||| | ||||||| || | ||||||||||||||
Sbjct 841 AAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATC-GGTGCTGGAAAGTC 899
Query 897 AGTTAGGAGTCTATTGATGGGAAAATCATCATCATCGGATTTGTCAACGGAACCTCTTCA 956
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 AGTTAGGAGTCTATTGATGGGAAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCA 959
Query 957 CCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAG-TCTATGACAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 960 CCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAG 1018
Query 1016 CTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCATGAGGGAAAATTGGGAAAGCT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCATGAGGGAAAATTGGGAAAGCT 1078
Query 1076 GTTGCATTAGGCCTTTCTATGAAGACAAATTGCAGCAATTGACCATAGAATAA 1128
| ||||| || |||| | ||| | ||||||| ||||| |||||||| |||||
Sbjct 1079 GCTGCATCAGACCTTACCCTGACGGCAAATTGGAGCAACTGACCATACAATAA 1131
> AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5:8195600-8197119
FORWARD LENGTH=1128
Length=1128
Score = 1170 bits (633), Expect = 0.0
Identities = 985/1150 (86%), Gaps = 44/1150 (4%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCAGG-AAATTGATAGGAGGAGGAGCGATGGCCT-CAGACCCAG 58
|||||||||||||||||| || ||| |||| ||||||| || || ||| | || | ||
Sbjct 1 ATGGGACGAGGTTCTCTC-GGAAAACTGATGGGAGGAGAAGAGAGGGCTTCCA-A---AG 55
Query 59 ATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAATT 118
||| ||| ||||| ||| ||||||||||||||||||||||||||||| |||| ||| |
Sbjct 56 ATACAGATACTTTCAACATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGAACAA-T 114
Query 119 C-GTACCATCGAACGTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACACAATGGAACGG 177
| |||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| ||
Sbjct 115 CAGTACCATCGAACCTCAGTGGCATCAAGTTTGGTAAATGGAGTGTATACATTGGAAGGG 174
Query 178 GACAAGCAAGAGAAACGGGTAGGTTCCGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 237
|||| || ||| |||||| |||||| ||| ||| ||||| ||| |||||||| ||||||
Sbjct 175 GACAGGCTTGAGGAACGGGAAGGTTCTGAAGCACTAGCCAAGCCATGGTGGGAATTTTTC 234
Query 238 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGATAGCTCCATATACGGTGCTGTT 297
||||| ||||| ||||||||||||||||||| | || |||||||| || ||||| ||
Sbjct 235 CACTTCACTTTACTCGAAACCTTGATCGACGA-T--GACAGCTCCATCTATGGTGCCATT 291
Query 298 TTCGAATAC-AAGCTCT-CCAACCTTTGCCAAAATACCTCTCATGTGAAAGCACCTCCAC 355
||||||||| || || | || |||| | |||||||||| |||||||||||| |||||
Sbjct 292 TTCGAATACGAA-CTATACC-ACCTCTACCAAAATACCCCTCATGTGAAAG---TTCCAC 346
Query 356 GTTATGTGATTGCATTCCGCGGCACGA-TCCTAGAGTCAGAAACTTGGATGACTGATGTG 414
| ||||| ||||| ||||||||||| | | || || | ||||||||| | |||| ||
Sbjct 347 GCTATGTAATTGCTTTCCGCGGCAC-AGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTG 405
Query 415 AAACATAACCTCAAATTCAGCTTCAACACCCTCCATGAAGGTGGTAGGTCTTTGCAGGCC 474
|||| | ||||||||| || |||||||||||||||| ||||||| |||||| || | |||
Sbjct 406 AAACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTATGTACGCC 465
Query 475 ATACGA-GCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTATATGGCTCGCTGG 533
||| | | ||| ||| ||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 466 ATA-AATGTAATCCGCCGTATGGTGGACAAACACAACCATTCAGCTATCTGGCTTGCTGG 524
Query 534 ACACTCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGACAAGTTT-TGGAT 592
||||||||||||||||||||||| |||| |||||||||||||||||| || ||| |||||
Sbjct 525 ACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGA-AAATTTCTGGAT 583
Query 593 TCCTCCTCGAAAGTTACATATTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTAC 652
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 584 TCCTCCTCGAGAGTTACATATTCAACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTAC 643
Query 653 CTGG-GG-GAAAAAAGATTAAAGGTGCGTTTCAATTCACCAAGACTGTCGTCAAAGCCAC 710
|||| || | | | | ||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 644 CTGGTGGCG-ATATA-ATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCAC 701
Query 711 CGTAGCCATGGTCTTAACCGATCTTCAGGTT-CAAGAAGACGATCCAAAAACAGCATCAT 769
||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||||||||
Sbjct 702 CGTAGCCATGGCCTTAACCGATCTACAGGTTCCAA-AAGACGATCCAAAGACAGCATCAT 760
Query 770 GGATACCTTATTTATATGTGAACCCAGAAGATCCAATATGTGCAGGATACATTGATTACT 829
|||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 761 GGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTGCAGGATACATCGATTACT 820
Query 830 TCAAACACAAAACCTTCATGTCTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTGCT 888
||| ||||||||||||||||||| |||| || |||||| | ||||||| || | ||||||
Sbjct 821 TCAGACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATC-GGTGCT 879
Query 889 GGAAAGTCAGTTAGGAGTCTATTGATGGGAA-AATC--AT--C-ATCA---TCGGATTTG 939
|||| |||||||||||||||||| |||||| || | | |||| |||||||||
Sbjct 880 AGAAAATCAGTTAGGAGTCTATTGGTGGGAAGAAGAGGAAAACTATCACCGTCGGATTTG 939
Query 940 TCAACGGAACCTCTTCACCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCG 999
||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 940 TCATCGGAACCTCTCCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAACCG 999
Query 1000 ACTAAGTCTATGACAGCTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGC-CATGAG 1058
|||||||| | ||||||||| |||||||| ||||||||||||||||||||| | | ||||
Sbjct 1000 ACTAAGTCAACGACAGCTCACGGACTTCACCAATGGTGGGAGCGAGACTCGACAC-TGAG 1058
Query 1059 GGAAAATTGGGAAAGCTGTTGCATTAGGCCTTTCTATGAAGACAAATTGCAGCAATTGAC 1118
|||||||||||||||||| ||||| || |||| | |||||| ||||||| ||||| ||||
Sbjct 1059 GGAAAATTGGGAAAGCTGCTGCATCAGACCTTACCATGAAGGCAAATTGGAGCAACTGAC 1118
Query 1119 CATAGAATAA 1128
|||| |||||
Sbjct 1119 CATACAATAA 1128
> AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5:8199757-8201051
FORWARD LENGTH=1016
Length=1016
Score = 475 bits (257), Expect = 3e-133
Identities = 582/730 (80%), Gaps = 58/730 (8%)
Strand=Plus/Plus
Query 403 ATGACTGATGTGAAACATAACCTCAAATTCAGCTTCA-ACACCCTCCATGAAGGTGGTAG 461
||| |||||||||||| | || || || || ||| | | | ||||||| |||| ||
Sbjct 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTT-AGATAACCTCCATCAAGGCCCCAG 59
Query 462 GTCTTTGCAGGCCATACGAGCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTAT 521
| || | || ||||||| ||| || ||| |||| | || ||||||| | | ||||||||
Sbjct 60 GACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTAT 119
Query 522 ATGGCTCGCTGGACACTCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGAC 581
||||| |||||||||||||||||||||||||||| |||| |||| || ||||||||||
Sbjct 120 CTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGAA 179
Query 582 AAGTTT-TGGATTCCTCCTCGAAAGTTACATATTCAACCCACCCATC-TCGTGTATTCCT 639
|| ||| ||||||||| ||||| |||||||||||||||||||||||| | | |||||||
Sbjct 180 AA-TTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATA-TCTATTCCT 237
Query 640 CTAGAGCAGTTACCTGG-GG-GAAAAAAGATTAAAGGTGCGTTTC-AATTCACCAAGA-C 695
||||||||| ||||||| || | | ||||||||| ||||| ||| |||| ||| |
Sbjct 238 CTAGAGCAGCTACCTGGCGGCGTTCTAC--TTAAAGGTGTGTTTCGAAT-CACCGAGAGC 294
Query 696 TGTCGTCAAAGCCAC--C-G-TA--GC--C-ATGGTCTTAACCGATCTTCAGGTTCAAGA 746
|||||||||| || | | || | | |||| |||||| |||| | |||||||||
Sbjct 295 C-TCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTGATCAACGGGTTCAAGA 353
Query 747 AGACGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAACCCAGAAGATCCAAT 806
||| ||||||| |||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 354 AGAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAAT 410
Query 807 ATGTGCAGGATACATTGATTACTTCAAACACAAAACCTTCATGTCTAAGATCGGTGCAAG 866
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 411 ATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAG 470
Query 867 CAAAATCGAGA-AAGCCGGTGCTGGAAAG-TCAGTTAGGAGTCTATTGAT--G--G---- 916
| | ||||||| || | ||| || ||| | ||| |||| | || || || | |
Sbjct 471 CCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACCCGAAGAATA 528
Query 917 G-AA-A--ATCATCATCATC---------G---GATTTGTCAACGGAACCTCTTCACCTT 960
| || | |||||||||||| | |||||||||| ||||||||||||||||
Sbjct 529 GGAACATCATCATCATCATCATCACCACTGTCTGATTTGTCAATGGAACCTCTTCACCTT 588
Query 961 CTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGTCTATGACAGCTCAT 1020
||||||||||||||||||| |||||||||||||||| || || ||||||| ||||||||
Sbjct 589 CTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTATGGCAGCTCAT 648
Query 1021 GGACTTCATCAATGGTGGGAGCGAGACTCGG-CCATGAGGGAAAATTGGGAAAGCTGTT- 1078
|| ||||| ||||||||||||| |||||| | || | ||| |||||||| ||| |||||
Sbjct 649 GGGCTTCACCAATGGTGGGAGCAAGACTCCGTCC-TAAGGAAAAATTGGAAAAACTGTTT 707
Query 1079 GCATTAGGCC 1088
| ||||||||
Sbjct 708 G-ATTAGGCC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5