BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351449
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin c... 638 0.0
AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat pro... 346 5e-94
> AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin
c induced 1 | chr5:8251378-8262154 REVERSE LENGTH=4826
Length=4826
Score = 638 bits (345), Expect = 0.0
Identities = 586/699 (84%), Gaps = 30/699 (4%)
Strand=Plus/Plus
Query 804 ACCTGATTATGAGGCAACCTTAGAGATATGCT-CAAAGGACGAA-CCATTTTCCGTCTTA 861
|||| ||||||| ||||| ||||||||| | | ||| |||| || || ||||| ||||
Sbjct 2894 ACCTAATTATGAAGCAACGTTAGAGATACG-TGCAATGGAC-AATCCTTTTTCTGTCTCG 2951
Query 862 GTTGCTTGTAAAGTTAATCCTC-GGCCTCTGAAGC-ATGTTG-T-TGAGATGTAT-CCAG 916
||| |||||||||||||||| | |||||||||| | | |||| | ||| || || |||
Sbjct 2952 GTTCCTTGTAAAGTTAATCC-CGGGCCTCTGAAACGA-GTTGCTGTGA-AT-AATCCCA- 3006
Query 917 AGTCTTTGGAATATTTGCTTCCAGGCTCTACTGTTC-AAAATTATATCCTGGAGATGTTC 975
|| || ||||| |||||||||||| ||||||| || || ||| |||||||||| |||||
Sbjct 3007 AGGCTCTGGAAAATTTGCTTCCAGATTCTACTG-TCGAAGATTTTATCCTGGAGTTGTTC 3065
Query 976 GATGGATATAATAACCATGTTGCAGAAGGGACCGATGTTCTGATATGTATTGAGGGCTAT 1035
||||||||||||||||||||||| || |||||||||||||||||| |||||| || |||
Sbjct 3066 GATGGATATAATAACCATGTTGCCGAGGGGACCGATGTTCTGATACATATTGATGGTTAT 3125
Query 1036 TGTATCAAAGACCCGATGGGCTTTAACCGAAAGGTCAATAGTTGTGGCTGCGTTGATCTG 1095
|||| ||||| ||||||| | ||||| ||||| ||||| |||||||| || ||||
Sbjct 3126 CGTATTGAAGACTGGATGGGCATCAACCGTAAGGTTGATAGTCGTGGCTGCATTAATCTA 3185
Query 1096 TCTGGAATTCTCCAAG-TCACGGCCAG-CTATGGGAAATCTATATCACTCTCTGTTATGT 1153
||||| ||||| ||| |||| | || ||||||||||||| ||||||||||||| ||||
Sbjct 3186 TCTGGCATTCTT-AAGGTCACAGA-AGGCTATGGGAAATCTGTATCACTCTCTGTAATGT 3243
Query 1154 ATGGTATTGATGAGATCTT-TAAGAAAGAGTCTCTGATTGA-GAGACGAGAGCTCATG-C 1210
||||| ||| | ||||| | |||||||| | ||||| || |||| |||| | | |
Sbjct 3244 CTGGTAATGAAGTTATCTTCTGT-AAAGAGTCACAAATTGATGA-ACGACAGCTAA-GAC 3300
Query 1211 TCT-TAACAAAGCTGCCTGACTGCTGTGCTGCTGGTTCAAATCTTACAAACCTCATTTTC 1269
| | |||| ||||||| ||||||||| |||||||| ||||||| | |||||||| |||
Sbjct 3301 T-TGTAACCGAGCTGCCCGACTGCTGTACTGCTGGTACAAATCTCATGAACCTCATCTTC 3359
Query 1270 GAAGTGACGGA-TTCAGATGGTGCTATGGATACTAGTATCCATCATGACGAAAAATCAGG 1328
|||||||||| || ||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 3360 CAAGTGACGGAGTT-AGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAATCAGG 3418
Query 1329 ATGTTTCCATACCATGAGCATTGAATCTGATTCAAGAAGCGTTGAGAGTGCAATCAGATA 1388
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3419 TTGTTTCCATACAATGAGCATTGAATCTGATTCAAGCAGCGTTGAAAGTGCAATCAGATA 3478
Query 1389 TGCCTTTGTCCACGAGTCCTGCAAAGTTCCTACTCTTTCCCTACCTGAGAGCGAGGGTGT 1448
|||||||||||||| ||||||||||||| || |||| ||||||||||||| |||||||||
Sbjct 3479 TGCCTTTGTCCACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTGT 3538
Query 1449 CTTTTCTTTCAGGGTTTTCCATTCTCGATTTCCCGAGCT 1487
|||||||| |||||| ||||||||||||| |||||||||
Sbjct 3539 CTTTTCTTGCAGGGTGTTCCATTCTCGATATCCCGAGCT 3577
Score = 394 bits (213), Expect = 2e-108
Identities = 459/573 (80%), Gaps = 35/573 (6%)
Strand=Plus/Plus
Query 1532 AGATTCAGCTAACGCCTGCTCAAATATTTGAAAGAGATGAGATTGGGTGTTCTACACCTT 1591
|||||||| |||| |||||| | || ||||||||| |||| ||| | |||||||||
Sbjct 3592 AGATTCAGGTAACATCTGCTCCCACATCTGAAAGAGAGGAGAGTGGATATTCTACACCCC 3651
Query 1592 ATTCAAGGATGAGTTTAACACCTCAATCAAAGATGGCTTCAACCACAAATTCATCGGTGG 1651
|||||| | || | | ||||| ||||| ||| |||||| |||||| || | |||
Sbjct 3652 ATTCAAAAACGACTCCACCACCTGAATCAGGGATTCCTTCAATCACAAA-TC--C-ATGG 3707
Query 1652 CTCCAACTGAACAAACTCCATGTTCACAGTTTAGAGTTTTGGCCATTAGGGCATCGTCAT 1711
| | | |||||||||||||||||| |||| |||||||||||| |||| ||||
Sbjct 3708 ---C--C-G-----ACTCCATGTTCACAGTTTGGAGTATTGGCCATTAGGTCATCATCAT 3756
Query 1712 CGGCTCTCAGTAGCCAAACTAGCCTGTTGGATATGGCACAGTTCACTGA-GAGCTTAAAA 1770
||||||||||||| ||||||||||| ||||||||||||||| |||||| || ||||||
Sbjct 3757 TGGCTCTCAGTAGCGAAACTAGCCTGATGGATATGGCACAGTACACTGAGGA-TTTAAAA 3815
Query 1771 GAAAAACTTATTAGAT-ACAG-TGAA-GACATAGTGGAAGTAGATGAGCGCCTAAAATGT 1827
|||||| | | || | || | ||| | | ||| ||| |||| |||||||||||||||
Sbjct 3816 GAAAAAATCAATA-TTGAC-GAAGAACG-CCGAGTTGAATTAGAAGAGCGCCTAAAATGT 3872
Query 1828 TTGGAAGC-CGAAC-AAAACCAGGCTAAGGAAGAGTTG-AGTA-CCTTGCAAGCTTCTCT 1883
||| | || | ||| || || ||| || ||||| || |||| | |||||||||||||
Sbjct 3873 TTGCAGGCTC-AACGTGAA-CATGCTGAGCAAGAG-TGTAGTAGAC-TGCAAGCTTCTCT 3928
Query 1884 GGAAACTCTCGGTGCTA-CATTCCCAGAATGCCTATCCACCAAAGAATCAATGATGAAAC 1942
|||| |||| ||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 3929 GGAACCTCTTGGTGC-ACCGTTTCCAGAATGCCTATCCACCAAAGAATCAATGATGAAGC 3987
Query 1943 AGATTAAAGAGAAGCATCAGGACACTGCAGCATCGGTTTTCTGTTGTTTGTATAGAAAGG 2002
| || ||||||||||||| |||||||||||||| || ||||||||| |||| |||||||
Sbjct 3988 AAATCGAAGAGAAGCATCATGACACTGCAGCATCAGTGTTCTGTTGTCTGTACAGAAAGG 4047
Query 2003 CTCCGCCTCCACAGTCTCGGTTTCTGTCAAAGAAAGGAGTGTTTGGCCTTGTAGAACTTC 2062
|||| ||||||| ||||| |||||||||| |||||||| |||||||| |||||| ||||
Sbjct 4048 CTCCACCTCCACGGTCTCTGTTTCTGTCACAGAAAGGAATGTTTGGCGTTGTAGCGCTTC 4107
Query 2063 TTGGTTCAGTTGCTTCCACCTCCCCTA-GCAGG 2094
| ||||||||||| ||||| || | || |||||
Sbjct 4108 TAGGTTCAGTTGCCTCCACGTCGC-TAAGCAGG 4139
> AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat protein
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444
Score = 346 bits (187), Expect = 5e-94
Identities = 242/269 (90%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 1220 AGCTGCCTGACTGCTGTGCTGCTGGTTCAAATCTTACAAACCTCATTTTCGAAGTGACGG 1279
||||||| |||||||||||||||||| ||||||| | |||||||| ||| |||||| ||
Sbjct 1015 AGCTGCCCGACTGCTGTGCTGCTGGTACAAATCTCATGAACCTCATCTTCCAAGTGATGG 1074
Query 1280 A-TTCAGATGGTGCTATGGATACTAGTATCCATCATGACGAAAAATCAGGATGTTTCCAT 1338
| || ||||||| || |||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1075 AGTT-AGATGGTTCTTTGGATACTAGCATCCATCATGACGAAAAACCAGGTTGTTTCCAT 1133
Query 1339 ACCATGAGCATTGAATCTGATTCAAGAAGCGTTGAGAGTGCAATCAGATATGCCTTTGTC 1398
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1134 ACAATGAGCATTGAATCTGATTCAAGCAGCATTGAGAGTGCAATCAGATATGCCTTTGTC 1193
Query 1399 CACGAGTCCTGCAAAGTTCCTACTCTTTCCCTACCTGAGAGCGAGGGTGTCTTTTCTTTC 1458
|||| ||||||||||||| || |||| ||||||||||||| ||||||||||||||| | |
Sbjct 1194 CACGGGTCCTGCAAAGTTTCTTCTCTCTCCCTACCTGAGAACGAGGGTGTCTTTTCGTGC 1253
Query 1459 AGGGTTTTCCATTCTCGATTTCCCGAGCT 1487
||||| ||||||||||||| |||||||||
Sbjct 1254 AGGGTGTTCCATTCTCGATATCCCGAGCT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103965328695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5