BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351455
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24318.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 1945 0.0
> AT5G24318.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:8281976-8284001 REVERSE LENGTH=1731
Length=1731
Score = 1945 bits (1053), Expect = 0.0
Identities = 1238/1328 (93%), Gaps = 10/1328 (1%)
Strand=Plus/Plus
Query 7 GGACTTCTAATAAT-CTTCTCAACAGG-AGCTGAAGCGAGCATTGGTGTAAACTACGGCA 64
||| |||| |||| ||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct 94 GGAGTTCTCTTAATCCTT-TCAACAGGAAG-TGAAGCGAGTATTGGTGTAAACTACGGCA 151
Query 65 CACTTGCCAACAACCTCCCTCCGCCGCAACAAGTAGCGGAGTTCCTCCTCCATTCAACCG 124
|||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 152 CACTAGCTAACAACCTCCCTCCACCGCAACAAGTAGCGGAGTTCCTCCTCCATTCCACCG 211
Query 125 TCATTAACCGCATCCGCCTCTTCGACACCGATCCTCAAATCCTCCAAGCCTTTGCTAACA 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 212 TCATTAACCGCATCCGCCTCTTCGACACCGATCCTCAAATCCTCCAAGCCTTCGCTAACA 271
Query 185 CCGGTATCGCCATCACCGTAACCGTCCCCAACGACCAAATCCCACACTTAACCAACCTCT 244
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCGGTATCGCCGTTACCGTAACCGTCCCCAACGACCAAATCCCACACTTAACCAACCTCT 331
Query 245 CCTCCGCCAAACAATGGATCTCCGATCAAATCCAACCTCACTTCCCATCAACAAACATCA 304
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 332 CCTCCGCCAAACAATGGATCTCCGATCACATCCAACCTCACTTCCCATCCACAAACATCA 391
Query 305 TCCATATCCTCGTCGGAAACGAAGTCATCTCCACCGCCAATCACCTCCTCATCAGAACCT 364
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 TCCGTATCCTCGTCGGAAACGAAGTCATCTCCACCGCCGATCACCTCCTCATCAGAACCT 451
Query 365 TAATCCCAGCAATGCAATCTCTCCACACCGCCTTAGTCTCCGCTTCTCTCCACCGTCGAA 424
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 452 TAATCCCGGCTATGCAATCTCTCCACACCGCCTTAGTCTCCGCCTCTCTCCACCGTCGAA 511
Query 425 TCCAAATCTCAACGCCACATTCTTTAGGAATCCTCACTAATACAACCCCACCGTCTTCCG 484
| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 512 TTCAAATCTCAACGCCACATTCTTTAGGAACCCTCACTAATTCAACCCCACCTTCTTCCG 571
Query 485 CTAAGTTCCGGCGAGGCTACGAC-ACAAATGTGCTTAAGCCTCTCCTTAGCTTTCTCCGA 543
||||||||||||||||||||||| | || || || ||||||||||||||||| |||||
Sbjct 572 CTAAGTTCCGGCGAGGCTACGACGCCCAA-GTCCTCAAGCCTCTCCTTAGCTTCCTCCGT 630
Query 544 TCTACTTCTTCTCCGTTCGTCGTGAATCCTTA-CCCGTTCTTCGGCTACTCAATCGAAAC 602
||||||||||| |||||||||||||||||||| ||| |||||||| || |||||||||||
Sbjct 631 TCTACTTCTTCGCCGTTCGTCGTGAATCCTTATCCC-TTCTTCGGTTATTCAATCGAAAC 689
Query 603 TCTCGATTTCACTCTCTTTAGACCTAATCCAGGCTTATTCGATCAACACCCGAAGCTTCT 662
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 690 TCTCGATTTCGCTCTCTTTAGACCTAATCCAGGCTTATTTGATCAACACACGAAGCTTCT 749
Query 663 CTACACAAACATGCTCGATGCTCAGCTTGATTCGGTTTATTCCGCCATCGATAAGCTAGG 722
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 750 CTACACAAACATGCTCGATGCTCAGCTTGATTCGGTTTATTCCGCCATGGATAAATTAGG 809
Query 723 GTTTTCAGATGTTGAGATCGTGATTGGCGAAATTGGATGGCCATCGGAGGGAGATATAGA 782
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 810 GTTTTCAGATGTTGAGATTGTGATTGGTGAAATTGGATGGCCATCGGAGGGAGATATAGA 869
Query 783 TCAAATCGGCGTTGATGTTGCTACAGCGGCTGAATTTAACAAGAATCTGGTGGCGCGTGT 842
||| ||||| |||||||||| |||||||||||| ||||||||||||||| | ||||||||
Sbjct 870 TCAGATCGGAGTTGATGTTGATACAGCGGCTGAGTTTAACAAGAATCTGATTGCGCGTGT 929
Query 843 AAATTCCGGTACTGGAACTCCATTGATGCCAAATCGGACTTTTGAAACTTACATTTTCGC 902
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AGATTCCGGTACCGGAACTCCATTGATGCCAAATCGGACTTTTGAAACTTACATTTTCGC 989
Query 903 GCTCTTCAATGAAAATCTCAAATCGGGACCAACGTCGGAGCGTAATTTCGGCATCTTCCG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GCTCTTCAATGAAAATCTCAAATCGGGACCAACGTCGGAGCGTAATTTCGGCATCTTCCG 1049
Query 963 ATCTGATTTGACTCCGATCTATGACATCGGAATCCTCCGGCCAACGTTTAGATCATCGAA 1022
||| ||| |||| ||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 1050 ATCAGATCTGACACCGATTTACGACATCGGAATCCTCCGGCCAACGTTTAGATCATCGGA 1109
Query 1023 TCCGGAGAATAATACGGCAA-CGCCGGTTCGAGCATCGCCGGAGAAGCGGTGGTGCGTTA 1081
||||| | ||| | | | | |||||| ||| |||| || ||||||||||||||| |
Sbjct 1110 TCCGGTTTACAATCCT-CGATCACCGGTTAGAGGATCGTCGTCGAAGCGGTGGTGCGTGA 1168
Query 1082 CAAAGGCCGGTGCTGAGACGGTGGCTTTACAAAGGAACATTGATTACGTATGTGGATTGG 1141
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1169 CAAAGGCCGGTGCAGAGACGGTGGCTTTACAAAGGAACATTGATTACGTATGTGGGTTGG 1228
Query 1142 GCTTGGACTGTAGGCCCATTAATGAAGGTGGGCTTTGTTTTTTACCGAACACAGTAAAAG 1201
| ||||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 1229 GTTTGGATTGTAGGCCCATTAATGAAGGTGGGCTTTGTTACTTGCCGAATACAGTGAAAG 1288
Query 1202 CCCATTCGGAGTACGCCATGAACTTGTATTACCAAACTATGGAGAAACACGAGTTCGATT 1261
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CCCATTCGAAGTACGCAATGAACTTGTATTACCAAACTATGGAGAAACACGAGTTCGATT 1348
Query 1262 GCGATTTCGACAACACTGGAGAGATAACTACGATTGATCCAAGCTATGGAAATTGTGAAT 1321
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1349 GCGATTTCGACAACACTGGAGAGATAACTACGATTGATCCCAGTTATGGAAATTGTGAAT 1408
Query 1322 ATCAGGCT 1329
||||||||
Sbjct 1409 ATCAGGCT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5