BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351499
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24790.1 | Symbols: | Protein of unknown function, DUF599 |... 1131 0.0
> AT5G24790.1 | Symbols: | Protein of unknown function, DUF599
| chr5:8512042-8513164 FORWARD LENGTH=875
Length=875
Score = 1131 bits (612), Expect = 0.0
Identities = 698/740 (94%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTGGAAGAAATGGTACTTAGACGCGATTCTTGTGCCCTTAGCTCTTATGATGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ATGGAGTGGAAGAAATGGTACTTAGACGCGATTCTTGTGCCCTTAGCTCTTATGATGATG 94
Query 61 ATTTGCTACCACATCTACTTGTCCTTCATGGTTCGAACCAATCCCTTCTCCACCCTCCTC 120
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 ATTTGTTACCACATCTACTTGTCCTTCATGGTCCGAACCAATCCCTTCTCCACCCTCCTC 154
Query 121 GGCATTAACTCTCACGGCCGCCGGATGTGGATTTCTGCTATGATCAAGGAGAATCAGAAG 180
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 155 GGCATTAACTCTCACGGCCGCCGGATTTGGATTTCTGCTATGATCAAGGACAATCAGAAG 214
Query 181 ACGAATATATTGGCCGTACAAACACTGCGTAACATAATAATGGGAGCTACACTAATGGCC 240
||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 215 ACGAACATATTGGCGGTACAAACACTGCGTAACATAGTAATGGGAGCTACACTGATGGCC 274
Query 241 ACGACCTGTGTACTTCTCTGCGCGGGTCTAGCCGCAGTGTTAAGCAGCACTTACAGCATC 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 ACGACCTGCGTGCTTCTCTGCGCGGGTCTAGCCGCAGTGTTAAGCAGCACTTACAGCATC 334
Query 301 AAGAAGCCTCTAAACGACGCCGTTTTTGGCGCTCATGGAGATTTTGCCATATCCATCAAA 360
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 335 AAGAAGCCTCTAAACGACGCCGTTTTTGGTGCTCATGGAGATTTCGCCATATCCATCAAA 394
Query 361 TACCTAACAATTCTCACAATCTTCATCTTCTCCTTCTTCTTCCACTCCCTATCCATCCGT 420
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 395 TACCTAACAATTCTCACAATTTTCATCTTCTCCTTTTTCTTCCACTCCCTCTCCATCCGT 454
Query 421 TTCCTAAACCAAGTCGCCATTCTCGTTAACATCCCTAATTTAGACCCTACTCCTTCTGGT 480
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 455 TTCCTAAACCAAGTCGCCATTCTCGTAAACATCCCTAACTTAGACCCTAATCCTTCTGGT 514
Query 481 TGCTTCTTCCTCACGTCTGAGCACGTAAGCGAGATGTTCGAAAAGGGTATCTTTCTCAAC 540
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 515 TGCGTCTTCCTCACGTCTGAGCACGTCAGCGAGATGTTCGAAAAGGGTATCTTTCTTAAC 574
Query 541 ACGGTAGGTAACAGGTTGTTCTACGCTGGCTTTTCTCTAATGCTATGGATCTTTGGTCCC 600
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 575 ACGGTAGGTAACAGGTTGTTCTACGCAGGCTTTTCTCTAATGTTATGGATCTTTGGTCCC 634
Query 601 ATCCTCGTGTTCTCGACCGTTTTGGTGATGGTTCTTGTTCTTTATAACCTCGATTTCGTG 660
||||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 635 ATCCTCGTGTTCTTTAGCGTTTTGGTGATGGTTCTTGTTCTTTCTCACCTCGATTTCGTG 694
Query 661 TCACGCAACAACAATAAAGAGAAACCACGTATTGTGGAT-TGCCGTCGCGCTTCTGATCT 719
|||||||||||||||||||| |||| |||||| |||||| | | |||| | |||||| |
Sbjct 695 TCACGCAACAACAATAAAGAAAAACTACGTATAGTGGATATAC-GTCGTTCCTCTGATTT 753
Query 720 CT-CGAATGGTGATGACGAC 738
| ||||||||| ||| |||
Sbjct 754 -TACGAATGGTGGTGAAGAC 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5