BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351538

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80820.1 | Symbols: CCR2, ATCCR2 | cinnamoyl coa reductase |...   370    8e-102
  AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5...   204    9e-52 
  AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 |...   195    5e-49 


> AT1G80820.1 | Symbols: CCR2, ATCCR2 | cinnamoyl coa reductase 
| chr1:30370572-30372670 FORWARD LENGTH=1283
Length=1283

 Score =  370 bits (200),  Expect = 8e-102
 Identities = 236/254 (93%), Gaps = 0/254 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGGAGCCGGCGGTAAACGGAGCCAAGTTCGTGATTGATGCAGCGGCTAAAGCCAAG  60
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  354  ATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCAGCGGCTAAAGCCAAG  413

Query  61   TTCAAGCCCGTGGTTTTCACGTCATCAATTGGTTTAGTTTACATTAACCCTAACCGTGAC  120
             |||||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||
Sbjct  414  GTCAAGCGCGTGGTTTTCACGTCATCAATTGGTGCAGTTTACATGAACCCTAACCGTGAC  473

Query  121  CCTAAAGCCATAGTTGACGAAAACTGCTGGAGTGATCTTGATTTCTGCAAAAATACTAAG  180
             || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  474  ACTCAAGCCATTGTTGACGAAAACTGCTGGAGTGATCTTGATTTCTGCAAAAACACTAAG  533

Query  181  AATTGGTATTGCTACGGGAAGATGGTGGTGGAACAATCGGCGTGGGAGACGGCGAAGGAA  240
            |||||||||||||||||||||||| ||| |||||||||||| ||||||||||| || | |
Sbjct  534  AATTGGTATTGCTACGGGAAGATGTTGGCGGAACAATCGGCATGGGAGACGGCCAAAGCA  593

Query  241  AAAGGTGTAGACTT  254
            |||||||| |||||
Sbjct  594  AAAGGTGTGGACTT  607


> AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5:22686832-22689471 
FORWARD LENGTH=2316
Length=2316

 Score =  204 bits (110),  Expect = 9e-52
 Identities = 126/133 (95%), Gaps = 3/133 (2%)
 Strand=Plus/Plus

Query  270  AGCAC-ATGACGATGAGCAGTATGTGTGGGAGTCCCAGGCCGGTGGG-TCTTTCACTGTG  327
            ||||| |||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||
Sbjct  597  AGCACAATGACGATGAGCAGTACGTGTGGGAGTCTCAGGCCGG-GGGATCTTTCACTGTG  655

Query  328  ACCAGAGACACCTCTGGGGAGGCTCTTGGTAGAGGAACAAAGATGGTCCTTTACCTCAAG  387
            ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct  656  ACCAGAGACACCTCTGGGGAGACTCTTGGTAGAGGAACAAAGATGGTTCTTTACCTCAAG  715

Query  388  GAAGACCAGTTGG  400
            |||||||||||||
Sbjct  716  GAAGACCAGTTGG  728


> AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 
| heat shock protein 81-3 | chr5:22681305-22684129 FORWARD 
LENGTH=2423
Length=2423

 Score =  195 bits (105),  Expect = 5e-49
 Identities = 133/146 (91%), Gaps = 3/146 (2%)
 Strand=Plus/Plus

Query  270  AGCAC-ATGACGATGAGCAGTATGTGTGGGAGTCCCAGGCCGGTGGGTCTTTCACTGTGA  328
            ||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct  524  AGCACAATGACGATGAGCAGTACGTGTGGGAGTCTCAGGCCGGTGGATCTTTCACCGTCA  583

Query  329  CCAGAGACACCTCTGGGGAGGCTCTTGGTAGAGGAACAAAGATGGTCCTTTACCTCAAGG  388
            |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  584  CCAGAGACACCTCTGGTGAGGCTCTTGGTAGAGGAACTAAGATGGTCCTTTACCTCAAGG  643

Query  389  AAGACCAGTTGGTG-ACAGGTGAGGA  413
            |||||||| ||| | |||  ||||||
Sbjct  644  AAGACCAGATGGAGTACAT-TGAGGA  668



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5