BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351553
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25415.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1105 0.0
AT5G60380.1 | Symbols: | Protein of Unknown Function (DUF239) ... 209 3e-53
> AT5G25415.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:8834206-8837248 FORWARD LENGTH=1118
Length=1118
Score = 1105 bits (598), Expect = 0.0
Identities = 742/808 (92%), Gaps = 24/808 (3%)
Strand=Plus/Plus
Query 62 CCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAATG 121
||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 175 CCCTAGTTCGTTCTGATC--AA-ACGTTGCCTCTCAGATCCTTCAAGTTAAGTGAAAATG 231
Query 122 CTAAATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCCAAA 181
||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 232 CTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTCGCTTCAAA 291
Query 182 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATTTCATGGTGTAGAAG 241
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 292 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATCATGGTGTAGAAG 351
Query 242 CTTGGTATGATGGATATGCGCTAAACGTTGGACGATATCAGATTTCATATAGCCAAATAT 301
|||||| | |||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 352 CTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCATATACCCAAATAT 411
Query 302 TTATAGGCAGTCGATTGAATAACCAAAACAATTTTATCCAAGCGGGTTATATTATAAATC 361
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 412 TTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTTATATTATTAATC 471
Query 362 CAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGGGTAAAGATGGAA 421
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 472 CAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGGGTAAAGATGGAA 531
Query 422 AAGGATGTTACAATACAGCATTTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 481
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGGATGTTACAATACAGCATGTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 591
Query 482 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGATTGGTCGCGTTGGTCCATCCATCAG- 540
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGACTGGTCGCGTTGGTCCATCCATCAGG 651
Query 541 A-AA------T-----T-GGTGGCTTACTCAA-TAT--CGAA-TGGACCTAACGAAGATA 583
| || | | |||||||||| ||| | | | || || ||||||||||||||
Sbjct 652 ATAAAGGAACTGGAAATTGGTGGCTTACACAAATCTTACAAAATGCACCTAACGAAGATA 711
Query 584 TTGGATATTGGTCAAAAGAGCTCTTTAATCTTATTGACAATGGTGCTACTACGGTTGGAG 643
||||||||||| |||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 712 TTGGATATTGGCCAAAAGAGTTATTTAATCTTATTAATAATGGTGCTACTACGGTTGGAG 771
Query 644 TTGGGGGTGCAGTACAAGCTTCTGGTTCAGGTGAAAGTCCCCCGATGGGTAATGGTAATT 703
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 TTGGAGGTGCAGTACAAGCTTCTGGTTCAGGTTCAAGTCCCCCGATGGGTAATGGTAATT 831
Query 704 TTCCAGTGGGAGGCCGCTTAGACTCAGCATTGGTTACAAATATTGAAGTTTTGGATTCCA 763
||||||| ||||||||| ||| |||||| | |||||||||||||||||||||||||||
Sbjct 832 TTCCAGTTGGAGGCCGCGCAGATTCAGCAATATTTACAAATATTGAAGTTTTGGATTCCA 891
Query 764 ACTATAAC-AATCGTAAAATGAATTCTTTTCCTACTGAGATTATGGTAGATAGTCCAAAA 822
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 892 ACTATAACCAA-CGTAAAATGAATTCTTTTCCTACTGAAATTATGGTAGATAGTCCAAAA 950
Query 823 TGTTATGGGGTAAGA-TTGGTAAGGTGA 849
|| |||||| ||||| ||||||||||||
Sbjct 951 TGCTATGGGTTAAGAATTGGTAAGGTGA 978
> AT5G60380.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:24285920-24287808 FORWARD LENGTH=1122
Length=1122
Score = 209 bits (113), Expect = 3e-53
Identities = 171/199 (86%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 1 ATGTCTACAACAATTAAGATAACTCTGGTTTTGAATCTCTTGCATCTATTGTTCGT-AGC 59
||||||||||||| || ||| ||||| ||| ||||||| |||| ||| |||||| | ||
Sbjct 1 ATGTCTACAACAACTAGGATCACTCTTGTTATGAATCTTTTGCCTCTTTTGTTC-TCAGT 59
Query 60 AGCCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119
||| |||||| |||| | |||| |||| |||||||||||||||||||||||||||||||
Sbjct 60 AGCTCTAGTTGGTTCGGTTCAATGTACGGTGCCTCTCAGATCCTTCAAGATAAGTGAAAA 119
Query 120 TGCTAA-ATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCC 178
|| | | ||||||||| ||||||||| ||| |||||||||||| ||||| ||||||||
Sbjct 120 TG-TGACATACGATTGCATAGATATTTATAAACAACCAGGACTTGATCATTCCTTGCTCA 178
Query 179 AAAACCACACAATCCAGAT 197
|||||||||||||||||||
Sbjct 179 AAAACCACACAATCCAGAT 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5