BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351608
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25950.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1770 0.0
AT5G25960.1 | Symbols: | Protein of Unknown Function (DUF239) ... 686 0.0
> AT5G25950.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:9057793-9059963 REVERSE LENGTH=1538
Length=1538
Score = 1770 bits (958), Expect = 0.0
Identities = 1156/1251 (92%), Gaps = 15/1251 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTGTTCTTAATAC-TTGTGATTTTGTGTGGATTTTACAATGAAGCCTATGGGAA 59
|||||||| |||||||| | |||||||||||||||| |||||||||||||| ||||||||
Sbjct 161 ATGAGATTTTTCTTAAT-CTTTGTGATTTTGTGTGGTTTTTACAATGAAGCATATGGGAA 219
Query 60 AGGTTCTTTAGATATTGATATAAAATTGAAGGCTCTTAATAAGCCAGCGTTGAAGACCAT 119
||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||
Sbjct 220 AGGTTCTTTAGATATTGATCTGAAATTGAAGGCTCTTAATAAACCTGCGTTGAAGACCAT 279
Query 120 CAAGAG-TACAGATGGAGATATAATAGATTGTATCGATATCTACAAACAACATGCCTTTG 178
|||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 280 CAAGAGCGA-AGATGGAGATATAATAGATTGTATAGATATCTATAAACAACATGCCTTTG 338
Query 179 ATCATCCCGCTTTAAGAAACCACAAAATTCAGATGAAACCGAGTGTGGAATTTGGTACAA 238
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 339 ATCATCCCGCTTTAAAAAACCACAAAATTCAGATGAAACCGAGTGTGAAATTTGGTACAA 398
Query 239 AGAAGACTACTACTATACCAAACAACGGTTCTTCTGAACAAATTACGTCTCAGGTTTGGT 298
||||| |||||||||||||||||||||||||||||||| || | |||||| ||||||
Sbjct 399 AGAAG---ACTACTATACCAAACAACGGTTCTTCTGAACACATAAAATCTCAGATTTGGT 455
Query 299 CTAAATCCGGAAACTGTCCAATGGGGACAATACCGGTTCGTAGAGTTAGTAGAGAAGACA 358
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 456 CTAAATCCGGAAAATGTCCAATGGGGACCATACCGGTTCGTAGAGTTAGTAGAGAAGACA 515
Query 359 TAAGCAGAGCCTCTTCACCGTCTGAATTTGGGAGGAAAACTCCTCACAGATACAAG-TTT 417
||||||||||||||||||||||| | |||||||||||||||||||||| |||| || |||
Sbjct 516 TAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGGAAAACTCCTCACAAATAC-AGCTTT 574
Query 418 CTCGACAACGCACTTCAACACAAGGGTAATTTCAATATAACAGCAGAAAAAATAAATC-A 476
|| ||||||||||||||||| ||||||||||||||||||||| | | ||||||||| | |
Sbjct 575 CTAGACAACGCACTTCAACATAAGGGTAATTTCAATATAACACCTGCAAAAATAAA-CGA 633
Query 477 AGCCCAACCAAGGTTACGATCGGAGGCATTTATTGTGGCCCTAGGGTACAATTTTGTCGG 536
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 AGCCCAACCAAGGTTAAGATCGGAGGCATTTATTGTGGCCCTAGGGTTCAATTTTGTCGG 693
Query 537 AGCTCAGTCTGATATAAATATTTGGAACCCTTCGAGGGTTGAGGCTAGCGACTACAGCAC 596
|||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct 694 AGCTCAATCTGATATAAATATTTGGAACCCTCCGAGGGTTGAAGCTACCGACTACAGTAC 753
Query 597 TGCCCAAATCTGGCTGGTTGGTGGTCTCTCAGATACTTTTGAGAGCCTAGAAGCTGGTTG 656
|||||| |||||||||||||||||||||||||| | |||||||||| | |||| ||||||
Sbjct 754 TGCCCAGATCTGGCTGGTTGGTGGTCTCTCAGAGAATTTTGAGAGCGTTGAAGGTGGTTG 813
Query 657 GATGGTGAATCCGGCCGTTTTCGGAGACTCACGTACACGTCTCTTCATCTCATGGACTAG 716
|||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 814 GATGGTGAATCCAGCTGTTTTCGGAGACTCACGTACCCGTCTCTTCATCTCCTGGACTAC 873
Query 717 AGATGCATACACTAAAACAGGGTGCATTAATCTCTTATGCGCGGGTTTTGTGCAAACAAG 776
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 874 AGATGGATACACTAAAACAGGGTGCATCAATCTCTTATGCGCGGGTTTTGTGCAAACAAG 933
Query 777 TCAAAAATTTGCCCTTGGTGCAACCATTGAACCTGTTTCGAGTGCCTCGAGTACGCAATA 836
| ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 934 TAAAAAATTTGCCCTTGGTGCAACCGTTGAACCTGTTTCGAGTTCCTCTAGTACGCAATA 993
Query 837 TGACATCACCGTTAGCGTGTTCCTGGATCCAAACAGTGGGAACTGGTGGTTGACTTGCGC 896
| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 994 TCACATCACCGTTAGCATATTCCTTGATCCAAACAGTGGGAACTGGTGGTTGACTTGCGA 1053
Query 897 AAACAACGTGATGGGTTATTGGCCAGGG-ACACTCTTCAACTACCTTAAACATAGCGCAA 955
|||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |
Sbjct 1054 AAACAACGTGTTGGGTTATTGGCC-GGGTACACTATTCAACTACCTAAAACACAGCGCCA 1112
Query 956 CCGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAATACTAAAGAAGCCACACA 1015
| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 1113 CAGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAGTATTGAAGAAGCCACACA 1172
Query 1016 CGACAACCTCAATGGGGAGTGGACAATGGGCATCTTACATTTGGGCCGAAGCTTGTTACC 1075
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1173 CGACAACCGCAATGGGGAGTGGACAATGGGCATCTTACATCTGGGCCGAAGCTTGTTTCC 1232
Query 1076 ACACTAACATTAGGATCAAGGACTATTCCATGCAGATCAAATACCCCAAGTATCTCTCAG 1135
|||| ||| |||||||||||||||||||||||||| ||||||||||| ||| ||| || |
Sbjct 1233 ACACAAACCTTAGGATCAAGGACTATTCCATGCAGCTCAAATACCCCCAGTTTCTATCCG 1292
Query 1136 AGTACGCTGATGAGTATGAA-TGTTATTCTACAAAGCTCCACCGGAAAACATATATGTCA 1194
|||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1293 AGTATGCTGATGAGTA-CAACTGTTATTCTACACTGCTCCACCGGAAAACATATATGTCA 1351
Query 1195 GAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAATTCTCGTTGTCCTTAA 1245
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1352 GAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAACTCTCGTTGTCCTTAA 1402
> AT5G25960.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:9062917-9065011 REVERSE LENGTH=1059
Length=1059
Score = 686 bits (371), Expect = 0.0
Identities = 624/742 (84%), Gaps = 34/742 (5%)
Strand=Plus/Plus
Query 512 TGGCCCTAGGGTACAATTTTGTCGGAGCTCAGTCTGATATAAATATTTGGAACCCTTCGA 571
||||| ||||||| |||||| | |||||||| || ||||||||| | ||||||||| |||
Sbjct 344 TGGCCTTAGGGTATAATTTTATTGGAGCTCAATCCGATATAAATGTATGGAACCCTCCGA 403
Query 572 GGGTTGAGGCTAGCGACTACAGCACTGCCCAAATCTGGCTGGTTGGTGGTCTCTCAGATA 631
||||| ||||||||||||||||| |||| || || |||||| ||||||| ||||||||||
Sbjct 404 GGGTTCAGGCTAGCGACTACAGCTCTGCTCAGATATGGCTGCTTGGTGGCCTCTCAGATA 463
Query 632 CTTTTGAGAGCCTAGAAGCTGGTTGGATGGTGAATCC-GGCCGTTTTCGGAGACTCACGT 690
||||||| ||| |||||||||||||| ||||||||| | |||||||||||||| ||
Sbjct 464 CTTTTGAAAGCATAGAAGCTGGTTGGGCGGTGAATCCAAG-TGTTTTCGGAGACTCCCGC 522
Query 691 ACACGTCTCTTCATC-TCA-TGGACTAGAGATGCATACACTAAAACAGGGTGCATTAATC 748
|||||||| |||| | | | ||||||| ||||| |||| ||||||| |||||| | || |
Sbjct 523 ACACGTCTTTTCA-CAT-ATTGGACTAAAGATGGATACTCTAAAACGGGGTGCGTCAACC 580
Query 749 TCTTATGCGCGGGTTTTGTGCAAACAAGTCA-AAAATTTGCCCTT-GGTGCAACCATTGA 806
|||||||||| |||||||||||||||| | | || |||| | || |||||| | || ||
Sbjct 581 TCTTATGCGCAGGTTTTGTGCAAACAACT-ACTAAGTTTG-CATTGGGTGCAGCAATAGA 638
Query 807 ACCTGTTTCGAGTGCCTCGAGTACGCAATATGACATCACCGTTAGCGTGTTCCTGGAT-C 865
||| ||||||| | | | | ||||| | | | || | || | | || ||| |
Sbjct 639 ACCCGTTTCGACT-AC-C---T-CGCAA-A--A-A-CAACATT-TCAT-CACC--GATAC 683
Query 866 CAAACAGTGGGAACTGGTGGTTGACTTGCGCAAACAACGTGATGGGTTATTGGCCAGGGA 925
| ||||| ||||| ||||||||||| || || ||||||||||| ||||||||||| ||||
Sbjct 684 C-AACAGCGGGAATTGGTGGTTGACATGTGCTAACAACGTGATAGGTTATTGGCCGGGGA 742
Query 926 CACTCTTCAACTACCTTAAACATAGCGCAACCGCTGTGCAGTGGGGTGGAGAAGTACATA 985
|||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 743 CACTCTTCGCCTACCTCAAACATAGCGCAACCGCTGTGCAGTGTGGTGGAGAAGTACATA 802
Query 986 GCCCTAACGTAATACTAAAGAAGCCACACACGACAACCTCAATGGGGAGTGGACAATGGG 1045
|||| |||| | ||||||||||| || | ||| |||||||||||||| |||||||
Sbjct 803 GCCCAAACG---TGGGGAAGAAGCCACATACAAGAACTTCAATGGGGAGTGGGCAATGGG 859
Query 1046 CATCTTACATTTGGGC-CGAAGCTTGTTACCACA-CTAACATTAGGATCAAGGACTATTC 1103
| |||||| | ||||| | ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 860 CCTCTTACCTCTGGGCTC-AAGCTTGTTACCACAGC-AACATTAGAATCAAGGACTATTC 917
Query 1104 CATGCAGATCAAATACCCCAAGTATCTCTCAGAGTACGCTGATGAGTATGAATGTTATTC 1163
| ||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 918 CTTGCAGATCAAATACCCCAAATATCTGTCCGAGTACGCTGATGAGTACGAGTGTTATTC 977
Query 1164 TACAAAGCTCCACCGGAAAACATATATGTCAGAGCCCCACTTTTACTTCGGAGGACCTGG 1223
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 978 TACAAAGCTCCACCGGAAAACATACATGTCAGAGCCCTACTTTTACTTTGGAGGACCTGG 1037
Query 1224 CCGGAATTCTCGTTGTCCTTAA 1245
|| |||||||||||||||||||
Sbjct 1038 CCAGAATTCTCGTTGTCCTTAA 1059
Score = 442 bits (239), Expect = 4e-123
Identities = 305/336 (91%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 1 ATGAGATTGTTCTTAATACTTGTGATTTTGTGTGGATTTTACAATGAAGCCTATGGGAAA 60
|||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAGATTGTTCTTAATATTTGCGATTCTGTGTGGTTTTTACAATGAAGCCTATGGGAAA 60
Query 61 GGTTCTTTAGATATTGATATAAAATTGAAGGCTCTTAATAAGCCAGCGTTGAAGACCATC 120
|||||||||||||| ||||| ||| ||||| ||||||||||||| | ||||||||||||
Sbjct 61 GGTTCTTTAGATATCGATATGAAACTGAAGTCTCTTAATAAGCCTTCCTTGAAGACCATC 120
Query 121 AAGAG-TACAGATGGAGATATAATAGATTGTATCGATATCTACAAACAACATGCCTTTGA 179
||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AAGAGCGA-AGATGGAGATATAATAGATTGTATAGATATCTACAAACAACATGCCTTTGA 179
Query 180 TCATCCCGCTTTAAGAAACCACAAAATTCAGATGAAACCGAGTGTGGAATTTGGTACAAA 239
||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 180 TCATCCCGCTTTAAGGAACCACAAGATTCAGATGAAACCGAGCGTGGACTTTGGTACAAA 239
Query 240 GAAGACTACTACTATACCAAACAACGGTTCTTCTGAACAAATTACGTCTCAGGTTTGGTC 299
||| ||||||| | | ||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 240 GAAAACTACTA-T-T-CCAAACAACGGTTCTTCGGAACAAATAACGTCTCAAATTTGGTC 296
Query 300 TAAATCCGGAAACTGTCC-AATGGGGACAATACCGG 334
|||||||||||| ||||| || ||| ||||||||||
Sbjct 297 TAAATCCGGAAATTGTCCCAAAGGG-ACAATACCGG 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5